Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_C05
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   149   4e-37

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  149 bits (362), Expect = 4e-37
 Identities = 85/242 (35%), Positives = 115/242 (47%), Gaps = 4/242 (1%)
 Frame = +3

Query: 66  HPFHLVDYRP*PFTGAIGVL--TLITGXXXXXXXXXXXXXXXXXXXXXXXAYQ**RDISR 239
           HP+H+V   P PF  ++ +    L                           Y   RD+S 
Sbjct: 14  HPYHIVSASPWPFFLSVVLFFNCLAATLYLHGYKHSSVFFGISFLGLLATMYLWFRDMST 73

Query: 240 EGTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXHRRLSPNIEIGRI*PPSRITP 419
           E    G HT  V KGL+ G                    H  LSP  E+G + PP  I  
Sbjct: 74  EANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPPVGIAD 133

Query: 420 --FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFLTILLGFYFTILQAYEY 593
              +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L++TI L F F   QAYEY
Sbjct: 134 KTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALSFLFLGGQAYEY 193

Query: 594 IEASFTIADRIYGSTLFIATGFHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y 773
             A FTI+D +YG++ + ATG HGIH+I+GT+ LL+        H +  HH GFE    Y
Sbjct: 194 WNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNGFECGIYY 253

Query: 774 *H 779
            H
Sbjct: 254 WH 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,550
Number of Sequences: 5004
Number of extensions: 40737
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)