Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_C04
(917 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 88 2e-18
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 48 2e-06
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 41 3e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 32 0.13
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 31 0.23
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 31 0.30
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 30 0.53
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 30 0.53
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 28 1.6
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 28 2.1
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 28 2.1
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 28 2.1
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 3.7
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 27 4.9
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 26 8.6
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 87.8 bits (208), Expect = 2e-18
Identities = 52/152 (34%), Positives = 77/152 (50%), Gaps = 8/152 (5%)
Frame = +1
Query: 322 ALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQ-ERPKRXXXXXXXXXXXXXXXXXXS 498
AL+ +QG+P Y KPM IQYSK SDII + + + E K+ +
Sbjct: 84 ALKDLQGYPLYGKPMMIQYSKSKSDIIVQRESPEEIETRKKDRKNRREMLKRTSALQPAA 143
Query: 499 RLIGHGIP------GAGILNNVNAEQ-PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEV 657
H P GA + +N + PPN++L L N+P E + +L+ +F F GF+EV
Sbjct: 144 PKPTHKKPVPKRNVGAERKSTINEDLLPPNKVLLLQNIPQEVNADVLTQIFEAFSGFQEV 203
Query: 658 RLVPNRHDIAFVEFGNXMQSAAAKEALQGFKI 753
R+VP R IAFVE+ + ++ AK G +
Sbjct: 204 RMVPGRRGIAFVEYDSDREATVAKNGTTGMSL 235
Score = 46.8 bits (106), Expect = 4e-06
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +3
Query: 120 KMTMDIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFK 299
K T P+ T+Y L +F +G+++D+ A KTL+MRGQAFV+F
Sbjct: 17 KETDSQTPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFD 76
Query: 300 EISSAT 317
+ +A+
Sbjct: 77 NLENAS 82
Score = 26.2 bits (55), Expect = 6.5
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +1
Query: 556 QPPNQILFLTNLPDETSEMMLSMLFNQ-FPGFKEVRLVPNRHDI-----AFVEFGNXMQS 717
Q P++ L++ N+ ++ ML + F + +V V R + AFV F N +
Sbjct: 22 QTPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENA 81
Query: 718 AAAKEALQGFKI 753
+ A + LQG+ +
Sbjct: 82 SRALKDLQGYPL 93
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/37 (56%), Positives = 30/37 (81%)
Frame = +3
Query: 204 SLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSA 314
+LY +FS +G ++DIVA+KT KMRGQA V+F + S+A
Sbjct: 23 ALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAA 59
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 40.7 bits (91), Expect = 3e-04
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +1
Query: 517 IPGAGILNNVNAEQ-PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAF 690
IP + N A+Q PP +++ NLP TSE L +LF+ G+K + + F
Sbjct: 408 IPASTPTNTNPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCF 467
Query: 691 VEFGNXMQSAAAKEALQG 744
VEF N + A + LQG
Sbjct: 468 VEFENIPYAMEALKNLQG 485
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 31.9 bits (69), Expect = 0.13
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +1
Query: 553 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFGNXMQS 717
E+ + L +TNL D+T E L LF +F G + V L ++ AFV + + +
Sbjct: 197 ERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCA 256
Query: 718 AAAKEALQGF 747
A++ L G+
Sbjct: 257 IKARDRLDGY 266
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 31.1 bits (67), Expect = 0.23
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 538 NNVNAEQ-PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVEFGNXM 711
+NV + P +++ NL + E L + F++ G++ + + + FVEF
Sbjct: 591 SNVQTDHNSPCNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFEEVC 650
Query: 712 QSAAAKEALQG 744
+A A E +QG
Sbjct: 651 HAAKAMEKMQG 661
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 30.7 bits (66), Expect = 0.30
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +1
Query: 565 NQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFGNXMQSAAAKEALQG 744
N +F+ L SE L LF F V++ P + FV+F N + A LQG
Sbjct: 302 NSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGK-GCGFVQFVNRQSAEIAINQLQG 360
Query: 745 FKI 753
+ +
Sbjct: 361 YPL 363
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 29.9 bits (64), Expect = 0.53
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 556 QPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRL--VPNRHDIAFVEFGNXMQSAAAK 729
Q N ILF+ NL + + + LF ++ +++RL AFV + N + A
Sbjct: 8 QEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRAC 67
Query: 730 EALQGF 747
E L G+
Sbjct: 68 EKLSGY 73
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 29.9 bits (64), Expect = 0.53
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 574 LFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFGN--XMQSAAAKEALQ 741
+F+ N+P ETS++ L + F K + R A+V+F N +Q A K+ LQ
Sbjct: 317 VFVKNIPPETSDVSLKSAMSIFGPVKAIEFA-RRKGTAYVDFVNHECVQLALNKKTLQ 373
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 547 NAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLV 666
++++ P+ ILF+ NL ET++ L F Q + VRL+
Sbjct: 221 SSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLM 260
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 571 ILFLTNLPDETSEMMLSMLFNQFPGFKEVRLV 666
++F+ N+P + SE ++ +FNQ K +LV
Sbjct: 8 VVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLV 39
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +3
Query: 204 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFK 299
SL F QFG++LD M+ T + RG F+ FK
Sbjct: 178 SLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -2
Query: 883 PDQRAFXRGMLKTVLSFSII--ILKITCFTLHY 791
P++ AF G ++ + FS+I IL I CF +HY
Sbjct: 49 PEKSAF--GSIEFIFYFSVILSILTIACFKIHY 79
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +1
Query: 559 PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFGN 705
PP +LF+ L T + L ++F++F +++ ++ AF+EF N
Sbjct: 241 PPENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDN 294
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 565 NQILFLTNL-PDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFGNXMQSAAAKEAL 738
N L++ + P + E ++S F ++ + +R++ N IAF+ + N + AKEA+
Sbjct: 173 NYTLYVGGITPTDDIEEIVSRHFAEWGDIERIRVL-NSRGIAFITYLNEANAQFAKEAM 230
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 302 NFKCHWLLCGACKDFHSMINQ*EFSIQKLI 391
+FKC +L CG KDF S N F Q ++
Sbjct: 194 SFKCSFL-CGDTKDFVSCSNNVPFLTQDIV 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,461,175
Number of Sequences: 5004
Number of extensions: 69451
Number of successful extensions: 180
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -