Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_C04
(917 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 107 8e-24
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 105 4e-23
Z81084-7|CAB03111.1| 312|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z81037-10|CAB02754.1| 312|Caenorhabditis elegans Hypothetical p... 42 5e-04
X95609-1|CAA64867.1| 312|Caenorhabditis elegans mec-8 protein. 42 5e-04
X95608-1|CAA64866.1| 312|Caenorhabditis elegans mec-8 protein. 42 5e-04
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 34 0.12
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 32 0.50
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z36948-5|CAD30435.1| 453|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z36948-4|CAA85411.3| 615|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 29 3.5
Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical pr... 29 4.7
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 6.2
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 6.2
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 6.2
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 6.2
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 6.2
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 28 8.1
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 107 bits (258), Expect = 8e-24
Identities = 61/157 (38%), Positives = 87/157 (55%)
Frame = +1
Query: 283 HLLFSRKFQVPLVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRXXXXXXX 462
H++F ++ A ++ GFPFY+KPMRIQ+++ DSD++A+ KGT+ +R +
Sbjct: 54 HVIF-KELPAASAAREALNGFPFYEKPMRIQFAREDSDVVAQEKGTYIKREPKYLSEKIL 112
Query: 463 XXXXXXXXXXXSRLIGHGIPGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFP 642
SR +G G PPN+ILF TNLPD + ML ++FNQF
Sbjct: 113 KKPK-------SRKKENGGDGPA---------PPNKILFCTNLPDSATAEMLEIMFNQFA 156
Query: 643 GFKEVRLVPNRHDIAFVEFGNXMQSAAAKEALQGFKI 753
G K++R+VPNR IAFVEF + A+ L FKI
Sbjct: 157 GLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFKI 193
Score = 58.0 bits (134), Expect = 9e-09
Identities = 26/62 (41%), Positives = 38/62 (61%)
Frame = +3
Query: 132 DIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 311
++ PN T+Y SL A+F QFG+I+ ++ +TLKMRGQA VIFKE+ +
Sbjct: 3 EVAPNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELPA 62
Query: 312 AT 317
A+
Sbjct: 63 AS 64
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 105 bits (252), Expect = 4e-23
Identities = 55/149 (36%), Positives = 82/149 (55%)
Frame = +1
Query: 322 ALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRXXXXXXXXXXXXXXXXXXSR 501
ALR++QGFPFY KPMRIQY++ DSD+I+++KGTF E+ ++ +
Sbjct: 66 ALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKRQKSTKIAKKPYEKPAKNGKSAA 125
Query: 502 LIGHGIPGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHD 681
P + PN ILF +N+P+ T + +F+QFPG +EVR +PN D
Sbjct: 126 EPTQKEP-----QETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKD 180
Query: 682 IAFVEFGNXMQSAAAKEALQGFKIPQHMQ 768
AF+E+ + S A++AL F+I Q
Sbjct: 181 FAFIEYESEDLSEPARQALDNFRITPTQQ 209
Score = 62.5 bits (145), Expect = 4e-10
Identities = 27/62 (43%), Positives = 40/62 (64%)
Frame = +3
Query: 132 DIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 311
DI PNHTIY SL+ +F+QFG+I+ +++ + KMRGQA ++FKE+SS
Sbjct: 3 DINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSS 62
Query: 312 AT 317
A+
Sbjct: 63 AS 64
>Z81084-7|CAB03111.1| 312|Caenorhabditis elegans Hypothetical
protein F46A9.6 protein.
Length = 312
Score = 42.3 bits (95), Expect = 5e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 574 LFLTNLPDETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVEFGNXMQSAAAKEALQGFK 750
LF+ NL E +E L +F F GF +RL N +AFVE+ + ++ A +LQGF+
Sbjct: 230 LFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQ 289
Query: 751 I 753
I
Sbjct: 290 I 290
>Z81037-10|CAB02754.1| 312|Caenorhabditis elegans Hypothetical
protein F46A9.6 protein.
Length = 312
Score = 42.3 bits (95), Expect = 5e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 574 LFLTNLPDETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVEFGNXMQSAAAKEALQGFK 750
LF+ NL E +E L +F F GF +RL N +AFVE+ + ++ A +LQGF+
Sbjct: 230 LFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQ 289
Query: 751 I 753
I
Sbjct: 290 I 290
>X95609-1|CAA64867.1| 312|Caenorhabditis elegans mec-8 protein.
Length = 312
Score = 42.3 bits (95), Expect = 5e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 574 LFLTNLPDETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVEFGNXMQSAAAKEALQGFK 750
LF+ NL E +E L +F F GF +RL N +AFVE+ + ++ A +LQGF+
Sbjct: 230 LFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQ 289
Query: 751 I 753
I
Sbjct: 290 I 290
>X95608-1|CAA64866.1| 312|Caenorhabditis elegans mec-8 protein.
Length = 312
Score = 42.3 bits (95), Expect = 5e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 574 LFLTNLPDETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVEFGNXMQSAAAKEALQGFK 750
LF+ NL E +E L +F F GF +RL N +AFVE+ + ++ A +LQGF+
Sbjct: 230 LFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQ 289
Query: 751 I 753
I
Sbjct: 290 I 290
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 207 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSA-TGC 323
+Y IF +FG + I T + RG AFV++++I A T C
Sbjct: 35 MYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTAC 74
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 32.3 bits (70), Expect = 0.50
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +1
Query: 574 LFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFGNXMQSAAAKEAL 738
LFL NLP T E L LF ++ EV++V ++ A VEF + AA AL
Sbjct: 281 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSAL 340
Query: 739 QGF 747
G+
Sbjct: 341 DGY 343
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +1
Query: 553 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFGN 705
E PP +LF+ L T++ L ++F++F +V +R AF+EF N
Sbjct: 236 EVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDN 291
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +1
Query: 553 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFGN 705
E PP +LF+ L T++ L ++F++F +V +R AF+EF N
Sbjct: 236 EVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDN 291
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +1
Query: 553 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFGN 705
E PP +LF+ L T++ L ++F++F +V +R AF+EF N
Sbjct: 167 EVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDN 222
>Z36948-5|CAD30435.1| 453|Caenorhabditis elegans Hypothetical
protein D2089.4b protein.
Length = 453
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +1
Query: 511 HGIPGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGF--KEVRLVPNRHDI 684
H G N +N PP L L+N+P SE L +F + GF K + P H +
Sbjct: 358 HRFKKPGSKNYLNI-YPPCATLHLSNIPTSVSEEKLKEMFAE-AGFAVKAFKFFPKDHKM 415
Query: 685 AFVEFGNXMQSAAAKEALQGFKIPQHMQ*RLLLLRNSV 798
A + + + A A+ K+ ++ R+ ++ +
Sbjct: 416 ALCQLEDIETAIDALIAMHNHKLAENAHLRVSFSKSGI 453
>Z36948-4|CAA85411.3| 615|Caenorhabditis elegans Hypothetical
protein D2089.4a protein.
Length = 615
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +1
Query: 511 HGIPGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGF--KEVRLVPNRHDI 684
H G N +N PP L L+N+P SE L +F + GF K + P H +
Sbjct: 520 HRFKKPGSKNYLNI-YPPCATLHLSNIPTSVSEEKLKEMFAE-AGFAVKAFKFFPKDHKM 577
Query: 685 AFVEFGNXMQSAAAKEALQGFKIPQHMQ*RLLLLRNSV 798
A + + + A A+ K+ ++ R+ ++ +
Sbjct: 578 ALCQLEDIETAIDALIAMHNHKLAENAHLRVSFSKSGI 615
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 207 LYAIFSQFGQILDI--VAMKTLKMRGQAFVIFKEISSATGCFAEHARISI 350
L A+FS+FG + + V K K +G AFV F +SA C A ++ +
Sbjct: 699 LKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEASAQKCVASGDKLML 748
>Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical
protein ZK20.3 protein.
Length = 372
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = -3
Query: 504 KSARIFVFLFLPIISTFR*LWTFRSFLK-----CSFTFCYYITINF*I-LNSHWFIIEWK 343
K+ F+F FLP+I F+ ++ F SF+ S TF +NF + LN I E K
Sbjct: 19 KTPSHFLFCFLPLILFFKMVFLFCSFINNQMMVLSVTFRTLTQVNFNLELNEDQTIAEVK 78
Query: 342 SLHAPQ 325
+L A +
Sbjct: 79 ALVASE 84
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = +3
Query: 219 FSQFGQILDIVAMK---TLKMRGQAFVIF 296
+SQFG+I DI+ M+ T + RG FV F
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = +3
Query: 219 FSQFGQILDIVAMK---TLKMRGQAFVIF 296
+SQFG+I DI+ M+ T + RG FV F
Sbjct: 5 YSQFGEITDIIVMRDPTTKRSRGFGFVTF 33
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = +3
Query: 219 FSQFGQILDIVAMK---TLKMRGQAFVIF 296
+SQFG+I DI+ M+ T + RG FV F
Sbjct: 5 YSQFGEITDIIVMRDPTTKRSRGFGFVTF 33
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = +3
Query: 219 FSQFGQILDIVAMK---TLKMRGQAFVIF 296
+SQFG+I DI+ M+ T + RG FV F
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = +3
Query: 219 FSQFGQILDIVAMK---TLKMRGQAFVIF 296
+SQFG+I DI+ M+ T + RG FV F
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Frame = +1
Query: 556 QPPNQI-LFLTNLPDETSEMMLSMLFNQFPGFKEVRLV--PNRHDIAFVEFGNXMQSAAA 726
+P N + LF+ LP + L +F K + PN AF+ FG + AA
Sbjct: 633 RPINPLQLFINALPGTCNNTDLKNIFRSSTDIKILHASGQPNSKKRAFITFGTVEDAQAA 692
Query: 727 KEALQGFKIPQHM 765
G K+ H+
Sbjct: 693 FAKSNGLKVNNHL 705
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,970,752
Number of Sequences: 27780
Number of extensions: 382044
Number of successful extensions: 827
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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