Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_C04
         (917 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    27   0.24 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    27   0.24 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   6.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.8  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   9.0  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   9.0  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    22   9.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   9.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   9.0  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   9.0  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 432 SFLKCSFTFCYYITINF*ILNSHWFIIEWKSLH 334
           S+L C   + Y++ + F I+ S+WFII+  + H
Sbjct: 215 SYLVCYGIWVYFVPL-FLIIYSYWFIIQAVAAH 246


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 432 SFLKCSFTFCYYITINF*ILNSHWFIIEWKSLH 334
           S+L C   + Y++ + F I+ S+WFII+  + H
Sbjct: 91  SYLVCYGIWVYFVPL-FLIIYSYWFIIQAVAAH 122


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -1

Query: 629 NNIDNIISEVSSGRFVKNRIW 567
           +NI   ++++  G+FV++ IW
Sbjct: 78  SNIAPYLNQIYGGQFVRDLIW 98


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 526 AGILNNVNAEQPPNQILFLTN 588
           +G++NNV +  PP  ++F  N
Sbjct: 138 SGLINNVRSVCPPQLLVFDLN 158


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 552 GTTSQPNSVLDKPSR*NFRD 611
           GT+S  NS++ K    NFRD
Sbjct: 930 GTSSPTNSLVGKTVAVNFRD 949


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 574 EFGWEVVPH 548
           E GW+V+PH
Sbjct: 139 ELGWDVLPH 147


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 574 EFGWEVVPH 548
           E GW+V+PH
Sbjct: 140 ELGWDVLPH 148


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 328 RSMQGFPFYDKPMRIQYSKIDSDIIAKSKG 417
           RS++G+PF       QY +++  + +   G
Sbjct: 112 RSLEGYPFNPCLTEAQYKEMEEKVSSTLSG 141


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 504 YWAWYPWCW 530
           +W  YPW W
Sbjct: 94  FWQQYPWQW 102


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 574 EFGWEVVPH 548
           E GW+V+PH
Sbjct: 261 ELGWDVLPH 269


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 328 RSMQGFPFYDKPMRIQYSKIDSDIIAKSKG 417
           RS++G+PF       QY +++  + +   G
Sbjct: 128 RSLEGYPFNPCLTEAQYKEMEEKVSSTLSG 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,151
Number of Sequences: 438
Number of extensions: 4827
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)