Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_C01
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    28   1.6  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   3.6  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    27   3.6  
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    26   8.3  

>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +3

Query: 312 AERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNAQNFAEVL 467
           AE  + + +   ++R L+T  E   +RK++   H T+   L +NA+NF + +
Sbjct: 620 AEANEWELVEVISRRVLNT-SENDLKRKKKFNWHHTSLGVLELNAKNFHKAI 670


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +3

Query: 375 ELSQERKEQLEQHQTTYDKLLVNAQNFAEVLGEDLGEAGEPPTLSLTVIETQGSVTIGGN 554
           EL    K+ LE   ++    L+NAQN  +   E+L E      LS  + E +  +  G N
Sbjct: 701 ELMSNEKQALELKYSSLKNELINAQNLLDRREEELSE------LSKKLFE-ERKIRSGSN 753

Query: 555 EDI 563
           +DI
Sbjct: 754 DDI 756


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 580 VPACIVMSSLPPMVTLP*VSITVRDKVGGSPASPKSSPRTS 458
           +P     SSL    TL  V   VRDK G +   P SSP+ S
Sbjct: 494 LPLDKTFSSLDGNPTLELVKKKVRDKKGSTQQLPTSSPQNS 534


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 102 KEEHNNIPILLSFCKHCGDDYAGLMPKK 185
           ++ HN+IP LL  C    + + G+  KK
Sbjct: 93  RKPHNHIPQLLEQCTCIAESFEGIYTKK 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,750
Number of Sequences: 5004
Number of extensions: 60446
Number of successful extensions: 191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)