Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_C01
(894 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK096191-1|BAC04721.1| 579|Homo sapiens protein ( Homo sapiens ... 163 1e-39
BC115737-1|AAI15738.1| 1272|Homo sapiens UPF2 regulator of nonse... 162 2e-39
BC114964-1|AAI14965.1| 1272|Homo sapiens UPF2 regulator of nonse... 162 2e-39
AY013249-1|AAG48509.1| 1272|Homo sapiens hUPF2 protein. 162 2e-39
AL645617-2|CAI16756.1| 579|Homo sapiens UPF2 regulator of nonse... 162 2e-39
AL645617-1|CAI16755.1| 1272|Homo sapiens UPF2 regulator of nonse... 162 2e-39
AL138898-5|CAH73459.1| 579|Homo sapiens UPF2 regulator of nonse... 162 2e-39
AL138898-4|CAH73458.1| 1272|Homo sapiens UPF2 regulator of nonse... 162 2e-39
AF318574-1|AAG60689.1| 1272|Homo sapiens UPF2 protein. 162 2e-39
AF301013-1|AAG33225.1| 1272|Homo sapiens regulator of nonsense t... 162 2e-39
AB037829-1|BAA92646.1| 1298|Homo sapiens KIAA1408 protein protein. 162 2e-39
BC036908-1|AAH36908.1| 464|Homo sapiens FLJ31438 protein protein. 34 0.80
BC029502-1|AAH29502.1| 586|Homo sapiens hypothetical protein FL... 32 2.4
AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens ... 31 5.6
AK022890-1|BAB14296.1| 714|Homo sapiens protein ( Homo sapiens ... 31 5.6
AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens ... 31 5.6
AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein. 31 5.6
AC004653-1|AAC17116.1| 338|Homo sapiens AP-4 protein. 31 7.5
>AK096191-1|BAC04721.1| 579|Homo sapiens protein ( Homo sapiens
cDNA FLJ38872 fis, clone MESAN2013674, highly similar to
Homo sapiens regulator of nonsense transcripts 2 (RENT2)
mRNA. ).
Length = 579
Score = 163 bits (395), Expect = 1e-39
Identities = 75/188 (39%), Positives = 119/188 (63%)
Frame = +3
Query: 87 LINMDKEEHNNIPILLSFCKHCGDDYAGLMPKKIREASEKYNIPVPRNTFLPAEKQTAVR 266
+IN D+E H ++ +++SFC+HCGDD AGL+P+K++ A+EK+N+ +P + + EKQ +
Sbjct: 264 IINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSLPPSEIISPEKQQPFQ 323
Query: 267 TLLKDYFLSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNA 446
LLK+YF SLTKHL + +LQ N+R LH++GELS++R +Q E+ +Y KLL N+
Sbjct: 324 NLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANS 383
Query: 447 QNFAEVLGEDLGEAGEPPTLSLTVIETQGSVTIGGNEDITMQAGTDPWQDEDSRTFYTCL 626
Q+ A++L E++ + + T G + ++ G W+DED+R FY L
Sbjct: 384 QSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGI--WEDEDARNFYENL 441
Query: 627 PDLKVFMP 650
DLK F+P
Sbjct: 442 IDLKAFVP 449
Score = 30.7 bits (66), Expect = 7.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 829 FLNELPNCINRELIXNAAVDF 891
FL +LPNC+NR+LI A F
Sbjct: 541 FLQQLPNCVNRDLIDKAEKAF 561
>BC115737-1|AAI15738.1| 1272|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 1272
Score = 162 bits (393), Expect = 2e-39
Identities = 75/188 (39%), Positives = 118/188 (62%)
Frame = +3
Query: 87 LINMDKEEHNNIPILLSFCKHCGDDYAGLMPKKIREASEKYNIPVPRNTFLPAEKQTAVR 266
+IN D+E H ++ +++SFC+HCGDD AGL+P+K++ A+EK+N+ P + + EKQ +
Sbjct: 294 IINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQ 353
Query: 267 TLLKDYFLSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNA 446
LLK+YF SLTKHL + +LQ N+R LH++GELS++R +Q E+ +Y KLL N+
Sbjct: 354 NLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANS 413
Query: 447 QNFAEVLGEDLGEAGEPPTLSLTVIETQGSVTIGGNEDITMQAGTDPWQDEDSRTFYTCL 626
Q+ A++L E++ + + T G + ++ G W+DED+R FY L
Sbjct: 414 QSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGI--WEDEDARNFYENL 471
Query: 627 PDLKVFMP 650
DLK F+P
Sbjct: 472 IDLKAFVP 479
Score = 37.1 bits (82), Expect = 0.086
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +1
Query: 829 FLNELPNCINRELIXNAAVDF 891
FL +LPNC+NR+LI AA+DF
Sbjct: 571 FLQQLPNCVNRDLIDKAAMDF 591
>BC114964-1|AAI14965.1| 1272|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 1272
Score = 162 bits (393), Expect = 2e-39
Identities = 75/188 (39%), Positives = 118/188 (62%)
Frame = +3
Query: 87 LINMDKEEHNNIPILLSFCKHCGDDYAGLMPKKIREASEKYNIPVPRNTFLPAEKQTAVR 266
+IN D+E H ++ +++SFC+HCGDD AGL+P+K++ A+EK+N+ P + + EKQ +
Sbjct: 294 IINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQ 353
Query: 267 TLLKDYFLSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNA 446
LLK+YF SLTKHL + +LQ N+R LH++GELS++R +Q E+ +Y KLL N+
Sbjct: 354 NLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANS 413
Query: 447 QNFAEVLGEDLGEAGEPPTLSLTVIETQGSVTIGGNEDITMQAGTDPWQDEDSRTFYTCL 626
Q+ A++L E++ + + T G + ++ G W+DED+R FY L
Sbjct: 414 QSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGI--WEDEDARNFYENL 471
Query: 627 PDLKVFMP 650
DLK F+P
Sbjct: 472 IDLKAFVP 479
Score = 37.1 bits (82), Expect = 0.086
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +1
Query: 829 FLNELPNCINRELIXNAAVDF 891
FL +LPNC+NR+LI AA+DF
Sbjct: 571 FLQQLPNCVNRDLIDKAAMDF 591
>AY013249-1|AAG48509.1| 1272|Homo sapiens hUPF2 protein.
Length = 1272
Score = 162 bits (393), Expect = 2e-39
Identities = 75/188 (39%), Positives = 118/188 (62%)
Frame = +3
Query: 87 LINMDKEEHNNIPILLSFCKHCGDDYAGLMPKKIREASEKYNIPVPRNTFLPAEKQTAVR 266
+IN D+E H ++ +++SFC+HCGDD AGL+P+K++ A+EK+N+ P + + EKQ +
Sbjct: 294 IINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQ 353
Query: 267 TLLKDYFLSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNA 446
LLK+YF SLTKHL + +LQ N+R LH++GELS++R +Q E+ +Y KLL N+
Sbjct: 354 NLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANS 413
Query: 447 QNFAEVLGEDLGEAGEPPTLSLTVIETQGSVTIGGNEDITMQAGTDPWQDEDSRTFYTCL 626
Q+ A++L E++ + + T G + ++ G W+DED+R FY L
Sbjct: 414 QSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGI--WEDEDARNFYENL 471
Query: 627 PDLKVFMP 650
DLK F+P
Sbjct: 472 IDLKAFVP 479
Score = 37.1 bits (82), Expect = 0.086
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +1
Query: 829 FLNELPNCINRELIXNAAVDF 891
FL +LPNC+NR+LI AA+DF
Sbjct: 571 FLQQLPNCVNRDLIDKAAMDF 591
>AL645617-2|CAI16756.1| 579|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 579
Score = 162 bits (393), Expect = 2e-39
Identities = 75/188 (39%), Positives = 118/188 (62%)
Frame = +3
Query: 87 LINMDKEEHNNIPILLSFCKHCGDDYAGLMPKKIREASEKYNIPVPRNTFLPAEKQTAVR 266
+IN D+E H ++ +++SFC+HCGDD AGL+P+K++ A+EK+N+ P + + EKQ +
Sbjct: 264 IINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQ 323
Query: 267 TLLKDYFLSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNA 446
LLK+YF SLTKHL + +LQ N+R LH++GELS++R +Q E+ +Y KLL N+
Sbjct: 324 NLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANS 383
Query: 447 QNFAEVLGEDLGEAGEPPTLSLTVIETQGSVTIGGNEDITMQAGTDPWQDEDSRTFYTCL 626
Q+ A++L E++ + + T G + ++ G W+DED+R FY L
Sbjct: 384 QSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGI--WEDEDARNFYENL 441
Query: 627 PDLKVFMP 650
DLK F+P
Sbjct: 442 IDLKAFVP 449
Score = 30.7 bits (66), Expect = 7.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 829 FLNELPNCINRELIXNAAVDF 891
FL +LPNC+NR+LI A F
Sbjct: 541 FLQQLPNCVNRDLIDKAEKAF 561
>AL645617-1|CAI16755.1| 1272|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 1272
Score = 162 bits (393), Expect = 2e-39
Identities = 75/188 (39%), Positives = 118/188 (62%)
Frame = +3
Query: 87 LINMDKEEHNNIPILLSFCKHCGDDYAGLMPKKIREASEKYNIPVPRNTFLPAEKQTAVR 266
+IN D+E H ++ +++SFC+HCGDD AGL+P+K++ A+EK+N+ P + + EKQ +
Sbjct: 294 IINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQ 353
Query: 267 TLLKDYFLSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNA 446
LLK+YF SLTKHL + +LQ N+R LH++GELS++R +Q E+ +Y KLL N+
Sbjct: 354 NLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANS 413
Query: 447 QNFAEVLGEDLGEAGEPPTLSLTVIETQGSVTIGGNEDITMQAGTDPWQDEDSRTFYTCL 626
Q+ A++L E++ + + T G + ++ G W+DED+R FY L
Sbjct: 414 QSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGI--WEDEDARNFYENL 471
Query: 627 PDLKVFMP 650
DLK F+P
Sbjct: 472 IDLKAFVP 479
Score = 37.1 bits (82), Expect = 0.086
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +1
Query: 829 FLNELPNCINRELIXNAAVDF 891
FL +LPNC+NR+LI AA+DF
Sbjct: 571 FLQQLPNCVNRDLIDKAAMDF 591
>AL138898-5|CAH73459.1| 579|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 579
Score = 162 bits (393), Expect = 2e-39
Identities = 75/188 (39%), Positives = 118/188 (62%)
Frame = +3
Query: 87 LINMDKEEHNNIPILLSFCKHCGDDYAGLMPKKIREASEKYNIPVPRNTFLPAEKQTAVR 266
+IN D+E H ++ +++SFC+HCGDD AGL+P+K++ A+EK+N+ P + + EKQ +
Sbjct: 264 IINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQ 323
Query: 267 TLLKDYFLSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNA 446
LLK+YF SLTKHL + +LQ N+R LH++GELS++R +Q E+ +Y KLL N+
Sbjct: 324 NLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANS 383
Query: 447 QNFAEVLGEDLGEAGEPPTLSLTVIETQGSVTIGGNEDITMQAGTDPWQDEDSRTFYTCL 626
Q+ A++L E++ + + T G + ++ G W+DED+R FY L
Sbjct: 384 QSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGI--WEDEDARNFYENL 441
Query: 627 PDLKVFMP 650
DLK F+P
Sbjct: 442 IDLKAFVP 449
Score = 30.7 bits (66), Expect = 7.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 829 FLNELPNCINRELIXNAAVDF 891
FL +LPNC+NR+LI A F
Sbjct: 541 FLQQLPNCVNRDLIDKAEKAF 561
>AL138898-4|CAH73458.1| 1272|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 1272
Score = 162 bits (393), Expect = 2e-39
Identities = 75/188 (39%), Positives = 118/188 (62%)
Frame = +3
Query: 87 LINMDKEEHNNIPILLSFCKHCGDDYAGLMPKKIREASEKYNIPVPRNTFLPAEKQTAVR 266
+IN D+E H ++ +++SFC+HCGDD AGL+P+K++ A+EK+N+ P + + EKQ +
Sbjct: 294 IINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQ 353
Query: 267 TLLKDYFLSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNA 446
LLK+YF SLTKHL + +LQ N+R LH++GELS++R +Q E+ +Y KLL N+
Sbjct: 354 NLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANS 413
Query: 447 QNFAEVLGEDLGEAGEPPTLSLTVIETQGSVTIGGNEDITMQAGTDPWQDEDSRTFYTCL 626
Q+ A++L E++ + + T G + ++ G W+DED+R FY L
Sbjct: 414 QSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGI--WEDEDARNFYENL 471
Query: 627 PDLKVFMP 650
DLK F+P
Sbjct: 472 IDLKAFVP 479
Score = 37.1 bits (82), Expect = 0.086
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +1
Query: 829 FLNELPNCINRELIXNAAVDF 891
FL +LPNC+NR+LI AA+DF
Sbjct: 571 FLQQLPNCVNRDLIDKAAMDF 591
>AF318574-1|AAG60689.1| 1272|Homo sapiens UPF2 protein.
Length = 1272
Score = 162 bits (393), Expect = 2e-39
Identities = 75/188 (39%), Positives = 118/188 (62%)
Frame = +3
Query: 87 LINMDKEEHNNIPILLSFCKHCGDDYAGLMPKKIREASEKYNIPVPRNTFLPAEKQTAVR 266
+IN D+E H ++ +++SFC+HCGDD AGL+P+K++ A+EK+N+ P + + EKQ +
Sbjct: 294 IINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQ 353
Query: 267 TLLKDYFLSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNA 446
LLK+YF SLTKHL + +LQ N+R LH++GELS++R +Q E+ +Y KLL N+
Sbjct: 354 NLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANS 413
Query: 447 QNFAEVLGEDLGEAGEPPTLSLTVIETQGSVTIGGNEDITMQAGTDPWQDEDSRTFYTCL 626
Q+ A++L E++ + + T G + ++ G W+DED+R FY L
Sbjct: 414 QSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGI--WEDEDARNFYENL 471
Query: 627 PDLKVFMP 650
DLK F+P
Sbjct: 472 IDLKAFVP 479
Score = 37.1 bits (82), Expect = 0.086
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +1
Query: 829 FLNELPNCINRELIXNAAVDF 891
FL +LPNC+NR+LI AA+DF
Sbjct: 571 FLQQLPNCVNRDLIDKAAMDF 591
>AF301013-1|AAG33225.1| 1272|Homo sapiens regulator of nonsense
transcripts 2 protein.
Length = 1272
Score = 162 bits (393), Expect = 2e-39
Identities = 75/188 (39%), Positives = 118/188 (62%)
Frame = +3
Query: 87 LINMDKEEHNNIPILLSFCKHCGDDYAGLMPKKIREASEKYNIPVPRNTFLPAEKQTAVR 266
+IN D+E H ++ +++SFC+HCGDD AGL+P+K++ A+EK+N+ P + + EKQ +
Sbjct: 294 IINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQ 353
Query: 267 TLLKDYFLSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNA 446
LLK+YF SLTKHL + +LQ N+R LH++GELS++R +Q E+ +Y KLL N+
Sbjct: 354 NLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANS 413
Query: 447 QNFAEVLGEDLGEAGEPPTLSLTVIETQGSVTIGGNEDITMQAGTDPWQDEDSRTFYTCL 626
Q+ A++L E++ + + T G + ++ G W+DED+R FY L
Sbjct: 414 QSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGI--WEDEDARNFYENL 471
Query: 627 PDLKVFMP 650
DLK F+P
Sbjct: 472 IDLKAFVP 479
Score = 37.1 bits (82), Expect = 0.086
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +1
Query: 829 FLNELPNCINRELIXNAAVDF 891
FL +LPNC+NR+LI AA+DF
Sbjct: 571 FLQQLPNCVNRDLIDKAAMDF 591
>AB037829-1|BAA92646.1| 1298|Homo sapiens KIAA1408 protein protein.
Length = 1298
Score = 162 bits (393), Expect = 2e-39
Identities = 75/188 (39%), Positives = 118/188 (62%)
Frame = +3
Query: 87 LINMDKEEHNNIPILLSFCKHCGDDYAGLMPKKIREASEKYNIPVPRNTFLPAEKQTAVR 266
+IN D+E H ++ +++SFC+HCGDD AGL+P+K++ A+EK+N+ P + + EKQ +
Sbjct: 320 IINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQ 379
Query: 267 TLLKDYFLSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNA 446
LLK+YF SLTKHL + +LQ N+R LH++GELS++R +Q E+ +Y KLL N+
Sbjct: 380 NLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANS 439
Query: 447 QNFAEVLGEDLGEAGEPPTLSLTVIETQGSVTIGGNEDITMQAGTDPWQDEDSRTFYTCL 626
Q+ A++L E++ + + T G + ++ G W+DED+R FY L
Sbjct: 440 QSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGI--WEDEDARNFYENL 497
Query: 627 PDLKVFMP 650
DLK F+P
Sbjct: 498 IDLKAFVP 505
Score = 37.1 bits (82), Expect = 0.086
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +1
Query: 829 FLNELPNCINRELIXNAAVDF 891
FL +LPNC+NR+LI AA+DF
Sbjct: 597 FLQQLPNCVNRDLIDKAAMDF 617
>BC036908-1|AAH36908.1| 464|Homo sapiens FLJ31438 protein protein.
Length = 464
Score = 33.9 bits (74), Expect = 0.80
Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 1/165 (0%)
Frame = +3
Query: 96 MDKEEHNNIPILLSFCKHCGDDYAGLMPKKIREASEKYNIPVPRNTFLPAEKQTAVRTLL 275
M +E N+ +L + KH D YA +I++A +P R L +++ V
Sbjct: 46 MTLQESMNLDVLTKYMKHLEDKYA-----EIKQAMLIKYVPAQRKADL--DEEMIVLLKR 98
Query: 276 KDYFLSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNAQNF 455
+D +L K L +LQ + A + + ++S ++ +EQ Q T K L Q
Sbjct: 99 RDVAENLNKKLQFCHQRLQIISQA--LSSWVKSDMSSPFQDFVEQIQKT--KYLQGDQGI 154
Query: 456 AEVLGEDLGEAGEPPTLSLTVIETQGS-VTIGGNEDITMQAGTDP 587
E L ED + + L IE +++G E A P
Sbjct: 155 VEELMEDDPRRAKEAEIMLHYIERFNELISLGEYEKAACYAANSP 199
>BC029502-1|AAH29502.1| 586|Homo sapiens hypothetical protein
FLJ31438 protein.
Length = 586
Score = 32.3 bits (70), Expect = 2.4
Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 1/165 (0%)
Frame = +3
Query: 96 MDKEEHNNIPILLSFCKHCGDDYAGLMPKKIREASEKYNIPVPRNTFLPAEKQTAVRTLL 275
M +E N+ L + KH D YA +I++A +P R L +++ V
Sbjct: 168 MTLQESMNLDALTKYMKHLEDKYA-----EIKQAMLIKYVPAQRKADL--DEEMIVLLKR 220
Query: 276 KDYFLSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNAQNF 455
+D +L K L +LQ + A + + ++S ++ +EQ Q T K L Q
Sbjct: 221 RDVAENLNKKLQFCHQRLQIISQA--LSSWVKSDMSSPFQDFVEQIQKT--KYLQGDQGI 276
Query: 456 AEVLGEDLGEAGEPPTLSLTVIETQGS-VTIGGNEDITMQAGTDP 587
E L ED + + L IE +++G E A P
Sbjct: 277 VEELMEDDPRRAKEAEIMLHYIERFNELISLGEYEKAACYAANSP 321
>AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens
cDNA FLJ46164 fis, clone TESTI4002799, highly similar
to DNA-directed RNA polymerase I 135 kDa polypeptide (EC
2.7.7.6). ).
Length = 1135
Score = 31.1 bits (67), Expect = 5.6
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -1
Query: 162 NHHHSVCKMITKLVYCYALLCPCLLEQVNTLPSKGNPSFSNLKGFPIM 19
NH +VC+++T+ VY ++ P LL + P G P S + +P++
Sbjct: 512 NHLTAVCEVVTQFVYTASI--PALLCNLGVTPIDGAPHRSYSECYPVL 557
>AK022890-1|BAB14296.1| 714|Homo sapiens protein ( Homo sapiens
cDNA FLJ12828 fis, clone NT2RP2002993, highly similar to
DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (EC
2.7.7.6). ).
Length = 714
Score = 31.1 bits (67), Expect = 5.6
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -1
Query: 162 NHHHSVCKMITKLVYCYALLCPCLLEQVNTLPSKGNPSFSNLKGFPIM 19
NH +VC+++T+ VY ++ P LL + P G P S + +P++
Sbjct: 91 NHLTAVCEVVTQFVYTASI--PALLCNLGVTPIDGAPHRSYSECYPVL 136
>AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens
cDNA FLJ12471 fis, clone NT2RM1000894, highly similar to
DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (EC
2.7.7.6). ).
Length = 1079
Score = 31.1 bits (67), Expect = 5.6
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -1
Query: 162 NHHHSVCKMITKLVYCYALLCPCLLEQVNTLPSKGNPSFSNLKGFPIM 19
NH +VC+++T+ VY ++ P LL + P G P S + +P++
Sbjct: 456 NHLTAVCEVVTQFVYTASI--PALLCNLGVTPIDGAPHRSYSECYPVL 501
>AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein.
Length = 1135
Score = 31.1 bits (67), Expect = 5.6
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -1
Query: 162 NHHHSVCKMITKLVYCYALLCPCLLEQVNTLPSKGNPSFSNLKGFPIM 19
NH +VC+++T+ VY ++ P LL + P G P S + +P++
Sbjct: 512 NHLTAVCEVVTQFVYTASI--PALLCNLGVTPIDGAPHRSYSECYPVL 557
>AC004653-1|AAC17116.1| 338|Homo sapiens AP-4 protein.
Length = 338
Score = 30.7 bits (66), Expect = 7.5
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +3
Query: 246 EKQTAVRTLLKDYFLSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTT 422
+K+ +VR +L++ SL H+ E+ ++ A Q+ L QE+ E+ +QH T
Sbjct: 163 DKERSVRMMLEEQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQHLRT 221
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,706,177
Number of Sequences: 237096
Number of extensions: 2178539
Number of successful extensions: 5584
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5571
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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