Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_C01
(894 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein. 51 1e-06
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w... 51 1e-06
Z92812-7|CAB07281.2| 341|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z22179-17|CAA80171.2| 691|Caenorhabditis elegans Hypothetical p... 29 3.4
Z22173-3|CAA80127.2| 691|Caenorhabditis elegans Hypothetical pr... 29 3.4
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 29 3.4
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 29 3.4
U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase ... 29 4.5
AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical ... 29 5.9
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 28 7.8
>EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.
Length = 1142
Score = 51.2 bits (117), Expect = 1e-06
Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 3/191 (1%)
Frame = +3
Query: 87 LINMDKEEHNNIPILLSFCKHCGDDYAGLMPKKIREAS--EKYNIPVPRNTFLPAEKQTA 260
LI DK + N+ +L + + G A ++P + +A E + +P ++ L E++ +
Sbjct: 174 LIQTDKTDFVNVGLLATVSRTVGWQIANIVPIPMDDAETVEIQDEELPESSALSVEQKKS 233
Query: 261 VRTLLKDYFLSL-TKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLL 437
+R L K Y+ SL +K A+ +A+ +R +RG+ E K L Q+ D L
Sbjct: 234 IRELFKSYYDSLYSKTEKTCSARNKAMKRV-KRQERSRGDAGDEEKTTLNDLQSELDSLR 292
Query: 438 VNAQNFAEVLGEDLGEAGEPPTLSLTVIETQGSVTIGGNEDITMQAGTDPWQDEDSRTFY 617
A + +G ++ +P + E + + + + W DE+++ FY
Sbjct: 293 KMAIEISSAIGVEM----KPLKEEASDDEEDEAANLEMGRKLA-EGAIKLWSDEETKAFY 347
Query: 618 TCLPDLKVFMP 650
L DL+ +P
Sbjct: 348 EDLIDLRQMVP 358
>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 3 protein.
Length = 1142
Score = 51.2 bits (117), Expect = 1e-06
Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 3/191 (1%)
Frame = +3
Query: 87 LINMDKEEHNNIPILLSFCKHCGDDYAGLMPKKIREAS--EKYNIPVPRNTFLPAEKQTA 260
LI DK + N+ +L + + G A ++P + +A E + +P ++ L E++ +
Sbjct: 174 LIQTDKTDFVNVGLLATVSRTVGWQIANIVPIPMDDAETVEIQDEELPESSALSVEQKKS 233
Query: 261 VRTLLKDYFLSL-TKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLL 437
+R L K Y+ SL +K A+ +A+ +R +RG+ E K L Q+ D L
Sbjct: 234 IRELFKSYYDSLYSKTEKTCSARNKAMKRV-KRQERSRGDAGDEEKTTLNDLQSELDSLR 292
Query: 438 VNAQNFAEVLGEDLGEAGEPPTLSLTVIETQGSVTIGGNEDITMQAGTDPWQDEDSRTFY 617
A + +G ++ +P + E + + + + W DE+++ FY
Sbjct: 293 KMAIEISSAIGVEM----KPLKEEASDDEEDEAANLEMGRKLA-EGAIKLWSDEETKAFY 347
Query: 618 TCLPDLKVFMP 650
L DL+ +P
Sbjct: 348 EDLIDLRQMVP 358
>Z92812-7|CAB07281.2| 341|Caenorhabditis elegans Hypothetical
protein T03E6.8 protein.
Length = 341
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -2
Query: 626 QACIECSRIFVLPR--ISTGLHSDVFIATNGYTSLSLYNSQGQSGRFTSFTQIFTKNFSK 453
QAC+ C + ++P +ST ++D+ I NG L L +SQG + F K
Sbjct: 258 QACV-CVALIIVPLAIVSTLFYADISILDNGLHFLLLISSQGAVNNLMHIVSALWRKFRK 316
Query: 452 IL 447
L
Sbjct: 317 KL 318
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
protein T28C6.9 protein.
Length = 1861
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 318 RAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYD 428
+ + Q +HA QR LH E RK + EQ T +D
Sbjct: 495 KQEAQRVHAEVQRLLHALSESELARKSEFEQATTAHD 531
>Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/48 (27%), Positives = 30/48 (62%)
Frame = +3
Query: 291 SLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKL 434
S++KHL E +++ +A +R ++ ++ + K++L QH++ DK+
Sbjct: 612 SISKHLEEELIEVKEFNAHLERQFQSQSDIIEALKKKLLQHRSFCDKI 659
>Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical
protein C14H10.2b protein.
Length = 412
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/48 (27%), Positives = 30/48 (62%)
Frame = +3
Query: 291 SLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKL 434
S++KHL E +++ +A +R ++ ++ + K++L QH++ DK+
Sbjct: 278 SISKHLEEELIEVKEFNAHLERQFQSQSDIIEALKKKLLQHRSFCDKI 325
>Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/48 (27%), Positives = 30/48 (62%)
Frame = +3
Query: 291 SLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKL 434
S++KHL E +++ +A +R ++ ++ + K++L QH++ DK+
Sbjct: 612 SISKHLEEELIEVKEFNAHLERQFQSQSDIIEALKKKLLQHRSFCDKI 659
>Z22179-17|CAA80171.2| 691|Caenorhabditis elegans Hypothetical
protein F58A4.11 protein.
Length = 691
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +3
Query: 294 LTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNAQNFA 458
L +HL + QLQA AA Q+ + + Q +++Q +Q Q + +NA N A
Sbjct: 312 LQQHLQNVQTQLQAAQAAVQKQ-QQQQQQQQIQQQQQQQQQGAIPQFALNAANLA 365
>Z22173-3|CAA80127.2| 691|Caenorhabditis elegans Hypothetical
protein F58A4.11 protein.
Length = 691
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +3
Query: 294 LTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNAQNFA 458
L +HL + QLQA AA Q+ + + Q +++Q +Q Q + +NA N A
Sbjct: 312 LQQHLQNVQTQLQAAQAAVQKQ-QQQQQQQQIQQQQQQQQQGAIPQFALNAANLA 365
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 321 AQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNAQNFAEVLGED 476
A +QA A++ + T E +++KE+ EQ Q + D + A+ E GED
Sbjct: 512 AVMQAKRKAHEPRISTVTEEKRKQKEEKEQQQKSTDIAVEIAEKTVENAGED 563
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 321 AQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNAQNFAEVLGED 476
A +QA A++ + T E +++KE+ EQ Q + D + A+ E GED
Sbjct: 512 AVMQAKRKAHEPRISTVTEEKRKQKEEKEQQQKSTDIAVEIAEKTVENAGED 563
>U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase c
protein 2, isoformc protein.
Length = 936
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 240 PAEKQTAVRTLLKDYFLSLTKHLLAERAQLQALHAANQRTLHT 368
P +K ++ LK + SLT H+L + + + + +A +R T
Sbjct: 5 PKQKSSSTSVFLKSHKFSLTSHILRKAKKRETMDSAERRRSET 47
>AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical
protein Y39G8B.2 protein.
Length = 339
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 357 TLHTRGELSQERKEQLEQHQTTYDKLLVNAQNFAEVLGEDLGEAG 491
T H+R Q+ E LE +TTY L+V F E GE G
Sbjct: 84 TYHSRNRCMQQIDEMLEIFETTYMDLIVIHWPFGWAEDEPPGERG 128
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +3
Query: 246 EKQTAVRTLLKDYFLSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTY 425
+K AV LLK + K++ Q Q L + + E ++ K+QLE+ Q++
Sbjct: 208 QKDEAVE-LLKQKLEEVEKNMSDVEVQKQLLLESTTSEMKQHAEAAEIVKKQLEEAQSSI 266
Query: 426 DKLLVNAQN 452
+ L +A+N
Sbjct: 267 ENLKKDAEN 275
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +3
Query: 246 EKQTAVRTLLKDYFLSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTY 425
+K AV LLK + K++ Q Q L + + E ++ K+QLE+ Q++
Sbjct: 208 QKDEAVE-LLKQKLEEVEKNMSDVEVQKQLLLESTTSEMKQHAEAAEIVKKQLEEAQSSI 266
Query: 426 DKLLVNAQN 452
+ L +A+N
Sbjct: 267 ENLKKDAEN 275
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,817,638
Number of Sequences: 27780
Number of extensions: 341068
Number of successful extensions: 1106
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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