Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_C01
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.93 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.93 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.6  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   8.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 520  ITVRDKVGGSPASPKSSPRTSAK 452
            +T  +K+G SP+SP  S RT  +
Sbjct: 1475 LTSHNKIGSSPSSPVLSVRTQGQ 1497


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 520  ITVRDKVGGSPASPKSSPRTSAK 452
            +T  +K+G SP+SP  S RT  +
Sbjct: 1471 LTSHNKIGSSPSSPVLSVRTQGQ 1493


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 496 GSPASPKSSPRTSAK 452
           GSP SP+S+ R S K
Sbjct: 321 GSPRSPESNSRCSVK 335


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 351 QRTLHTRGELSQERKEQLEQHQTTYDK 431
           +RT H R   S+ER+++  +++  Y K
Sbjct: 265 ERTSHKRYSRSREREQKSYKNEREYRK 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,221
Number of Sequences: 438
Number of extensions: 3824
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)