Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_B23
         (927 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   9.9  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    23   9.9  

>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -1

Query: 402 VKQGKRTLGWLVATVH*KMFS---FT*DVRAVIVDTGVSEIITE 280
           +KQG+RT   L+     K  +       VR +I D GVS ++TE
Sbjct: 379 IKQGRRTHARLLRMELSKTANAPLMLEGVRKIIGDAGVSRLVTE 422


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
 Frame = -2

Query: 785 EISKXSNYFF-LNVYSKRFRVDFEALKYYTKNTKTAANYSCSVICSVRIKQTIGSSFTL- 612
           +++K S + F + V SK+     E  K +  ++   ++  C       +KQ+ G S TL 
Sbjct: 257 KVAKSSEFSFTVGVVSKKR----EQPKSWIIDSGATSHMCCDRAFFDELKQSTGVSITLA 312

Query: 611 ------VPRTRSRYVYYIHMLDSRRK*LILDVYRI 525
                 V    S ++YY      RRK  + DVY +
Sbjct: 313 DGNETVVKGVGSGHLYYYEENGDRRKITLNDVYYV 347


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 818,955
Number of Sequences: 2352
Number of extensions: 15046
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 100882044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)