Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_B23
         (927 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z48009-6|CAA88079.1|  329|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical
           protein M02B1.3 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 791 VSFNCETPKXYNFINSHYXLSVIEWTIIWF 880
           V    E P  + F+NS +  +V+ +T++WF
Sbjct: 37  VGAELEMPDYWGFVNSIFLPTVVFYTLLWF 66


>Z48009-6|CAA88079.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.8 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -3

Query: 196 ICFLTFVWMRSDVALHVGFFFFSFLPGIVVXIIIKDRNYIIVENFYIPXPXLKGFPIV 23
           ICFLTFV     +   +GFF        +  II  +  Y++    Y P      FPI+
Sbjct: 238 ICFLTFVQFIFFLVYSLGFFIIK----SIREIISYENYYLVAVWLYTPPYIAASFPIL 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,306,715
Number of Sequences: 27780
Number of extensions: 363532
Number of successful extensions: 801
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)