Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_B23
         (927 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    27   0.32 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   6.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   9.1  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 17/64 (26%), Positives = 34/64 (53%)
 Frame = -2

Query: 788 IEISKXSNYFFLNVYSKRFRVDFEALKYYTKNTKTAANYSCSVICSVRIKQTIGSSFTLV 609
           + +S  S+Y +L+   +R  +D E  KY   ++  +   SCS +    I++++ + F  V
Sbjct: 288 VVVSDYSDYSYLDEKLERNDLDLE--KYEGISSTPSQASSCSCLDCDEIRESLDTQFLQV 345

Query: 608 PRTR 597
            R+R
Sbjct: 346 CRSR 349


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 106 RLQFQVKKKRKRNPREEQHLNASKQMS 186
           +L+ Q++K+R R      HL+ +KQM+
Sbjct: 325 QLEIQLQKERDRLTAMMHHLHVAKQMA 351


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +2

Query: 29  RESLKXWXWNVKI--LNYDVISIFYDN 103
           +  +  W WN+KI  L++D  S+  +N
Sbjct: 360 QNEMNKWWWNMKISNLSFDKQSLLKEN 386


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 764 NLTVY*SQCVSFNCETPKXYNFINSHYXLSVIEW 865
           N+T Y SQCV+FN      +    S + + ++ W
Sbjct: 182 NVTWY-SQCVTFNAFPTYTHEITYSLFGMIMMYW 214


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 91  DRNYIIVENFYIPXP 47
           D  + I++N YIP P
Sbjct: 641 DAQFDIIQNIYIPEP 655


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,642
Number of Sequences: 438
Number of extensions: 4342
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)