Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_B21
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0608 + 4515709-4515951,4516085-4516678 39 0.005
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505... 36 0.033
03_06_0316 + 33091194-33091370,33091451-33092155 36 0.033
04_03_0041 + 10046063-10046170,10046284-10046742 34 0.18
01_05_0530 + 22984672-22984821,22985444-22985676,22986659-229867... 33 0.40
07_01_0479 + 3606663-3607448 32 0.54
07_03_1091 + 23899825-23900649,23900750-23900998,23901104-239011... 29 3.8
03_02_0095 + 5593353-5593638,5593739-5594130,5594316-5594816 29 5.0
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 28 8.7
>07_01_0608 + 4515709-4515951,4516085-4516678
Length = 278
Score = 39.1 bits (87), Expect = 0.005
Identities = 28/67 (41%), Positives = 34/67 (50%)
Frame = +2
Query: 311 EMVNSAIAELKERSGSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKG 490
EM+ AI LKER+GSS QAI K+I A + L P RK L ++ T K
Sbjct: 81 EMIMEAIVALKERTGSSSQAIGKHIHANH---GANLPPNFRKLLSGNLKKLTAAGKLAK- 136
Query: 491 ASGSFKL 511
SFKL
Sbjct: 137 VKNSFKL 143
>08_02_0743 -
20647440-20647927,20647997-20648426,20650127-20650570,
20650639-20650692
Length = 471
Score = 36.3 bits (80), Expect = 0.033
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +2
Query: 311 EMVNSAIAELKERSGSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTK 481
EM+ +AI L E+SGS+ AI K+I +Y A + +L ESG LI K
Sbjct: 18 EMILAAIEGLNEKSGSNKSAISKFIEGKYGDLPPAHASLLTAHLARMKESGELIFLK 74
>03_06_0316 + 33091194-33091370,33091451-33092155
Length = 293
Score = 36.3 bits (80), Expect = 0.033
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Frame = +2
Query: 311 EMVNSAIAELKERSGSSLQAIKKYIAAQYKVDAEKLAPFIRKYL----KNAVESGTLIQT 478
EM++ AIA LKER+GSS AI K++ ++K + L RK L K V +G L +
Sbjct: 59 EMISEAIATLKERTGSSQYAIGKFLEDKHK---DHLPSNFRKQLLVQIKKLVAAGKLTKV 115
Query: 479 K 481
K
Sbjct: 116 K 116
>04_03_0041 + 10046063-10046170,10046284-10046742
Length = 188
Score = 33.9 bits (74), Expect = 0.18
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 311 EMVNSAIAELKERSGSSLQAIKKYIAAQYKVD-AEKLAPFIRKYLKNAVESGTLIQTK 481
EM+ AI LKER+GSS AI KY+ ++ + L+ G L++ K
Sbjct: 36 EMIKEAITVLKERTGSSAHAIAKYMEEKHGASLPANYKKMLSIQLRGFASKGKLVKVK 93
>01_05_0530 +
22984672-22984821,22985444-22985676,22986659-22986743,
22986953-22987036,22987114-22987455
Length = 297
Score = 32.7 bits (71), Expect = 0.40
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +2
Query: 311 EMVNSAIAELKERSGSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGK 487
+++ AI +LKE SGS+ I YI QY E + LK V +G LI+ K
Sbjct: 131 DLILEAIKKLKEPSGSNRTTISSYIEEQY-WPPEDFQRLLSTKLKALVATGKLIKVNQK 188
>07_01_0479 + 3606663-3607448
Length = 261
Score = 32.3 bits (70), Expect = 0.54
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Frame = +3
Query: 519 RPQLRRNPVPDLVVRPVAV------P*GQQRATLRP--LPLRQRLKAAAATKRXGPAPVV 674
+PQ+ R P+P+L PVA P GQ +RP +P+ + G P
Sbjct: 145 QPQISRPPMPNLSAPPVAYPQVVRPPPGQMPPPMRPPQMPIPFQRPPGVPPAFPGGPPPP 204
Query: 675 PLRLLRGRXPAGPEXKR 725
P +RG P GP R
Sbjct: 205 PGPFMRGPPPMGPPQVR 221
>07_03_1091 +
23899825-23900649,23900750-23900998,23901104-23901195,
23901413-23902193
Length = 648
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 540 PVPDLVVRPVAVP*GQQRATLRPLPLRQRLKAAAATKRXGPAPVVPLRLLRG 695
PV RP ++P R LRP L++ L+ + G AP P R RG
Sbjct: 3 PVSSSTSRPASLPSSPHRPALRPGSLQRLLRPPDPSDDDGAAPTAP-RSSRG 53
>03_02_0095 + 5593353-5593638,5593739-5594130,5594316-5594816
Length = 392
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 615 LRQRLKAAAATKRXGPAPVVPLRLLRGRXPAGPEXKRXXRQLH 743
L +R A AA R G VVP RL R A + +R ++LH
Sbjct: 163 LGRRSAAGAAHGRKGKNRVVPERLSRDHNVADEDVRRELKELH 205
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Frame = -3
Query: 620 PKRKRTKRCP------LLPLRNCHRTHHQIRNRVSSKLRSSIP 510
P+R+R +R P ++P+R H HH N + +LR IP
Sbjct: 72 PRRRRRRRAPRRRRKAMMPVRTYHHHHHH-NNSNNHRLRRIIP 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,636,627
Number of Sequences: 37544
Number of extensions: 293162
Number of successful extensions: 702
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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