Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_B21
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016425-12|AAB65336.1|  190|Caenorhabditis elegans Histone h1 l...    60   2e-09
AF017812-1|AAB70559.1|  191|Caenorhabditis elegans histone H1.2 ...    58   8e-09
AF017811-1|AAB70666.1|  191|Caenorhabditis elegans histone H1.2 ...    58   8e-09
AC084197-2|AAM44399.1|  241|Caenorhabditis elegans Histone h1 li...    58   8e-09
Z78239-1|CAB01632.1|  232|Caenorhabditis elegans Hypothetical pr...    56   3e-08
AF002679-1|AAB60893.1|  232|Caenorhabditis elegans histone H1-li...    56   3e-08
AF068708-3|AAC17754.1|  253|Caenorhabditis elegans Histone h1 li...    56   5e-08
AF026521-1|AAB82588.1|  253|Caenorhabditis elegans histone H1.4 ...    56   5e-08
AF005371-1|AAB81029.1|  253|Caenorhabditis elegans histone H1.4 ...    56   5e-08
Z79603-3|CAB01892.1|  208|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AF017810-1|AAB70665.1|  208|Caenorhabditis elegans histone H1.1 ...    54   1e-07
AF005372-1|AAB81030.1|  225|Caenorhabditis elegans histone H1.5 ...    54   1e-07
AF003145-1|AAB57720.1|  225|Caenorhabditis elegans Histone h1 li...    54   1e-07
X53277-1|CAA37372.1|  208|Caenorhabditis elegans histone H1 prot...    51   1e-06
U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like...    51   1e-06
AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3 ...    51   1e-06
AL117206-6|CAB60450.1|  734|Caenorhabditis elegans Hypothetical ...    35   0.068

>AF016425-12|AAB65336.1|  190|Caenorhabditis elegans Histone h1 like
           protein 6 protein.
          Length = 190

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
 Frame = +2

Query: 314 MVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGK 487
           MV +AI+ LKER GSS  AI KYI A YK+    +K+   +R  LK  V S  L+QT G 
Sbjct: 41  MVTAAISSLKERKGSSKIAILKYITANYKLGDQVKKINSNLRSALKKGVASKALVQTVGT 100

Query: 488 GASGSFKL 511
           GA+G F++
Sbjct: 101 GATGRFRV 108


>AF017812-1|AAB70559.1|  191|Caenorhabditis elegans histone H1.2
           protein.
          Length = 191

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
 Frame = +2

Query: 314 MVNSAIAELKERSGSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAVESGTLIQTKGK 487
           MV +AI+ LKER GSS  AI KYI A YKV  +  K+   +R  L   V S  L+Q+ G 
Sbjct: 44  MVTAAISSLKERKGSSKIAILKYITANYKVGDQLTKINSRLRAALNKGVASKALVQSVGN 103

Query: 488 GASGSFKL 511
           GASG F++
Sbjct: 104 GASGRFRV 111


>AF017811-1|AAB70666.1|  191|Caenorhabditis elegans histone H1.2
           protein.
          Length = 191

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
 Frame = +2

Query: 314 MVNSAIAELKERSGSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAVESGTLIQTKGK 487
           MV +AI+ LKER GSS  AI KYI A YKV  +  K+   +R  L   V S  L+Q+ G 
Sbjct: 44  MVTAAISSLKERKGSSKIAILKYITANYKVGDQLTKINSRLRAALNKGVASKALVQSVGN 103

Query: 488 GASGSFKL 511
           GASG F++
Sbjct: 104 GASGRFRV 111


>AC084197-2|AAM44399.1|  241|Caenorhabditis elegans Histone h1 like
           protein 2, isoforma protein.
          Length = 241

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
 Frame = +2

Query: 314 MVNSAIAELKERSGSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAVESGTLIQTKGK 487
           MV +AI+ LKER GSS  AI KYI A YKV  +  K+   +R  L   V S  L+Q+ G 
Sbjct: 94  MVTAAISSLKERKGSSKIAILKYITANYKVGDQLTKINSRLRAALNKGVASKALVQSVGN 153

Query: 488 GASGSFKL 511
           GASG F++
Sbjct: 154 GASGRFRV 161


>Z78239-1|CAB01632.1|  232|Caenorhabditis elegans Hypothetical
           protein C30G7.1 protein.
          Length = 232

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
 Frame = +2

Query: 311 EMVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKG 484
           +M+  AI  +   +GSS  AI KYIA  Y V  +  K+   +R  LK AV+SG + QT+G
Sbjct: 42  DMIKGAIQAIDNGTGSSKAAILKYIAQNYHVGENLPKVNNHLRSVLKKAVDSGDIEQTRG 101

Query: 485 KGASGSFKL 511
            GA+GSF++
Sbjct: 102 HGATGSFRM 110


>AF002679-1|AAB60893.1|  232|Caenorhabditis elegans histone H1-like
           protein protein.
          Length = 232

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
 Frame = +2

Query: 311 EMVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKG 484
           +M+  AI  +   +GSS  AI KYIA  Y V  +  K+   +R  LK AV+SG + QT+G
Sbjct: 42  DMIKGAIQAIDNGTGSSKAAILKYIAQNYHVGENLPKVNNHLRSVLKKAVDSGDIEQTRG 101

Query: 485 KGASGSFKL 511
            GA+GSF++
Sbjct: 102 HGATGSFRM 110


>AF068708-3|AAC17754.1|  253|Caenorhabditis elegans Histone h1 like
           protein 4 protein.
          Length = 253

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
 Frame = +2

Query: 314 MVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGK 487
           MV  AI+ +K+R G S  AI KYI  +Y +   A K+   +RK L   +ES   +Q  G 
Sbjct: 58  MVTEAISSIKDRKGPSRAAILKYITTKYTLGDQANKINAHLRKALNKGLESNAFVQASGN 117

Query: 488 GASGSFKL 511
           GA+G F+L
Sbjct: 118 GANGRFRL 125


>AF026521-1|AAB82588.1|  253|Caenorhabditis elegans histone H1.4
           protein.
          Length = 253

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
 Frame = +2

Query: 314 MVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGK 487
           MV  AI+ +K+R G S  AI KYI  +Y +   A K+   +RK L   +ES   +Q  G 
Sbjct: 58  MVTEAISSIKDRKGPSRAAILKYITTKYTLGDQANKINAHLRKALNKGLESNAFVQASGN 117

Query: 488 GASGSFKL 511
           GA+G F+L
Sbjct: 118 GANGRFRL 125


>AF005371-1|AAB81029.1|  253|Caenorhabditis elegans histone H1.4
           protein.
          Length = 253

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
 Frame = +2

Query: 314 MVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGK 487
           MV  AI+ +K+R G S  AI KYI  +Y +   A K+   +RK L   +ES   +Q  G 
Sbjct: 58  MVTEAISSIKDRKGPSRAAILKYITTKYTLGDQANKINAHLRKALNKGLESNAFVQASGN 117

Query: 488 GASGSFKL 511
           GA+G F+L
Sbjct: 118 GANGRFRL 125


>Z79603-3|CAB01892.1|  208|Caenorhabditis elegans Hypothetical
           protein M163.3 protein.
          Length = 208

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
 Frame = +2

Query: 314 MVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGK 487
           M+  AI +LK+R G+S QAI K+I+  YK+  +  ++   +R+ LK  V S  L+Q  G 
Sbjct: 44  MIKEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHLRQALKRGVTSKALVQAAGS 103

Query: 488 GASGSFKL 511
           GA+G F++
Sbjct: 104 GANGRFRV 111


>AF017810-1|AAB70665.1|  208|Caenorhabditis elegans histone H1.1
           protein.
          Length = 208

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
 Frame = +2

Query: 314 MVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGK 487
           M+  AI +LK+R G+S QAI K+I+  YK+  +  ++   +R+ LK  V S  L+Q  G 
Sbjct: 44  MIKEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHLRQALKRGVTSKALVQAAGS 103

Query: 488 GASGSFKL 511
           GA+G F++
Sbjct: 104 GANGRFRV 111


>AF005372-1|AAB81030.1|  225|Caenorhabditis elegans histone H1.5
           protein.
          Length = 225

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
 Frame = +2

Query: 314 MVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGK 487
           M+  A++ LK+R GSS  AI K+I A+Y +     K    +R  LK  V S  L+QT G 
Sbjct: 44  MITEAVSNLKDRKGSSRVAIFKFITAKYTLGDQVNKTNAHLRSALKKGVVSKVLVQTNGI 103

Query: 488 GASGSFKL 511
           GA+G F+L
Sbjct: 104 GANGRFRL 111


>AF003145-1|AAB57720.1|  225|Caenorhabditis elegans Histone h1 like
           protein 5 protein.
          Length = 225

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
 Frame = +2

Query: 314 MVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGK 487
           M+  A++ LK+R GSS  AI K+I A+Y +     K    +R  LK  V S  L+QT G 
Sbjct: 44  MITEAVSNLKDRKGSSRVAIFKFITAKYTLGDQVNKTNAHLRSALKKGVVSKVLVQTNGI 103

Query: 488 GASGSFKL 511
           GA+G F+L
Sbjct: 104 GANGRFRL 111


>X53277-1|CAA37372.1|  208|Caenorhabditis elegans histone H1
           protein.
          Length = 208

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
 Frame = +2

Query: 317 VNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGKG 490
           +  AI +LK+R G+S QAI K+I+  YK+  +  ++    R+ LK  V S  L+Q +G G
Sbjct: 45  IKEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHHRQALKRGVTSKALVQARGSG 104

Query: 491 ASGSFKL 511
           A+G F++
Sbjct: 105 ANGRFRV 111


>U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like
           protein 3 protein.
          Length = 208

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
 Frame = +2

Query: 314 MVNSAIAELKERSGSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAVESGTLIQTKGK 487
           MV +AI  LKER GSS  AI KYI   Y V  +  K+   +R  L   V S  L+Q+ G 
Sbjct: 44  MVTAAINGLKERKGSSKIAILKYITKNYNVGDQIIKINARLRDTLNKGVVSKALVQSVGT 103

Query: 488 GASGSFKL 511
           GASG F++
Sbjct: 104 GASGRFRV 111


>AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3
           protein.
          Length = 208

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
 Frame = +2

Query: 314 MVNSAIAELKERSGSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAVESGTLIQTKGK 487
           MV +AI  LKER GSS  AI KYI   Y V  +  K+   +R  L   V S  L+Q+ G 
Sbjct: 44  MVTAAINGLKERKGSSKIAILKYITKNYNVGDQIIKINARLRDTLNKGVVSKALVQSVGT 103

Query: 488 GASGSFKL 511
           GASG F++
Sbjct: 104 GASGRFRV 111


>AL117206-6|CAB60450.1|  734|Caenorhabditis elegans Hypothetical
           protein Y67A10A.9 protein.
          Length = 734

 Score = 35.1 bits (77), Expect = 0.068
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +2

Query: 344 ERSGSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGAS 496
           E   S+ Q  K+  +A Y+VD+  L  + + YLKNA+E G + Q   + AS
Sbjct: 260 ELLSSNGQNFKRSFSAVYRVDSSALRQWEKSYLKNAMEKGDVEQNFKRTAS 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,724,501
Number of Sequences: 27780
Number of extensions: 229622
Number of successful extensions: 534
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)