Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_B20
(908 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 29 0.91
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 29 0.91
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 28 1.6
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 27 2.8
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 2.8
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 27 4.9
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple... 27 4.9
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 27 4.9
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 6.4
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 26 8.5
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 26 8.5
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 29.1 bits (62), Expect = 0.91
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 462 RKIRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENT 569
R++++ + + KK + S+ S + +NND D S E+T
Sbjct: 158 RRLKQKRFETKKNNFSVKESSNLSNNDSDASLDEDT 193
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 29.1 bits (62), Expect = 0.91
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 381 RWSPSRLHPARPACCVDGGSSKT-PSLGLRLF 289
RW R PA +CC G + PS+ LR+F
Sbjct: 172 RWCVRRFSPASNSCCHSGAPVHSGPSMALRIF 203
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 28.3 bits (60), Expect = 1.6
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Frame = +3
Query: 345 QAEPDGALKETTAADH-GNIITK-KGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTR 518
QA+ D LK+T D+ N+ T G H+D D+ +A +K+R + + ++++ Q +
Sbjct: 50 QAKYD-LLKDTNMTDYVANLWTNLHGGHTDEDMANAFAEKRRSVLQELSELEEEVQGILG 108
Query: 519 SLDFTN-----NDDDGSNAENTPKH 578
L+ + D G N ++ +H
Sbjct: 109 VLENPDLIAALRQDKGQNLQHLQEH 133
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 178 FSVPPTTQRIKSLFEQNKRVLSHFLRIYSIFFCFSPAL 65
F++PP S+ N R ++ R+ SI FCF+ A+
Sbjct: 823 FTLPPIKVNTFSVGVSNSRFVNGQFRVSSISFCFTHAV 860
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = +3
Query: 378 TAADHGNIITKKGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLDFTNNDDDGSN 557
+ A+ N+ + + +S N+Q + + +L ++ A+Q +L T+++ D
Sbjct: 493 STAEVSNVRNDESKANSLSEISYNQQSECRSSELNVNEDSANQKEESALG-TSDNSDMYE 551
Query: 558 AENTPKH 578
ENTP H
Sbjct: 552 KENTPIH 558
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/66 (19%), Positives = 30/66 (45%)
Frame = +3
Query: 294 NEDRAKGSLTSRRRHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIR 473
NED + ++ +R+ + + + D GN ++ +D L + ++ KIR
Sbjct: 285 NEDNTQKPISKKRKSKKASHKYLSSRTAPNVDFGNFAKERHRENDVSELYSKTKRTSKIR 344
Query: 474 KLKLDV 491
+L ++
Sbjct: 345 ELYKEI 350
>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
beta subunit Tfg2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 26.6 bits (56), Expect = 4.9
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +3
Query: 351 EPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLDF 530
+P+ LKE D I+ K+G ++ L + ++L ++ASQS + S+D
Sbjct: 221 QPEVYLKEVL--DSIAILNKRGPYALKYSLKPEYKGTMDAASVELRNQQASQSESSSIDH 278
Query: 531 TNN----DDDGSNAE 563
T D+ G+NAE
Sbjct: 279 TGKNTSPDNPGTNAE 293
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 354 PDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIRKL 479
P + + T H N+ KK S +D S+ +K K RKL
Sbjct: 1111 PVSSFAKQTTNKHANLKQKKTHSSKSDKKSSRRRKNEKRRKL 1152
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 160 TQRIKSLFEQNKRVLSHFLRIYSIFFCFSPALNYTLSFQNLKXF 29
+ R +S+F + K+ + LR +++F FSP + TL F L F
Sbjct: 120 SNRPRSIFGKIKQFFNILLRSFNLFIIFSPII-ITLPFIALISF 162
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 382 AVVSFKAPSGSACVLCRRRLVK 317
A+ F+ S +C++CRRR VK
Sbjct: 7 ALKKFRKRSPKSCLICRRRKVK 28
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -1
Query: 374 LLQGSIRLGLRVVSTAARQRPLRSVFVCFSKICYIRQYLTECI 246
LL+ +I++ R+V T +Q+ + C +C I C+
Sbjct: 4 LLKRNIQISKRIVFTILKQKAFKGNHPCVPSVCTITYSRFHCL 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,278
Number of Sequences: 5004
Number of extensions: 58279
Number of successful extensions: 213
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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