Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_B20
(908 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical p... 34 0.12
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein. 32 0.49
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge... 32 0.49
AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical ... 31 1.5
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ... 30 2.6
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 30 2.6
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ... 30 2.6
U49945-4|AAC47924.1| 535|Caenorhabditis elegans Hypothetical pr... 29 3.5
U41548-2|AAA83204.1| 399|Caenorhabditis elegans Hypothetical pr... 29 3.5
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 29 3.5
AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical ... 29 4.6
Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical p... 29 6.1
Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical pr... 29 6.1
U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical p... 29 6.1
U29381-3|AAA68758.2| 617|Caenorhabditis elegans Hypothetical pr... 29 6.1
AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine n... 29 6.1
AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho ... 29 6.1
AF038618-9|AAB92066.1| 304|Caenorhabditis elegans Hypothetical ... 29 6.1
AC024817-3|AAK68524.1| 482|Caenorhabditis elegans Hypothetical ... 29 6.1
AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-... 29 6.1
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 28 8.0
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 28 8.0
>U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical
protein C37C3.1 protein.
Length = 470
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +2
Query: 377 HRRRSWKHNNKKRLSLRHRHFIRERAEEEENKKIKTRRQESQSID 511
H +S KH +K+ S RH R R E++ KK K RR+ S + D
Sbjct: 428 HHSKSRKHRSKRSESREERH--RRRKEKKREKKKKRRRRSSTTSD 470
>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
Length = 1359
Score = 32.3 bits (70), Expect = 0.49
Identities = 21/85 (24%), Positives = 39/85 (45%)
Frame = +3
Query: 327 RRRHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIRKLKLDVKKASQ 506
+R+ ++ E D +E+ + S S++D E +K+ K K+D KK +
Sbjct: 58 KRKASSSEEDDDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEK 117
Query: 507 SMTRSLDFTNNDDDGSNAENTPKHK 581
S + ++ D+D S+ E K K
Sbjct: 118 SKKKRTTSSSEDED-SDEEREQKSK 141
>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
related protein 1 protein.
Length = 1359
Score = 32.3 bits (70), Expect = 0.49
Identities = 21/85 (24%), Positives = 39/85 (45%)
Frame = +3
Query: 327 RRRHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIRKLKLDVKKASQ 506
+R+ ++ E D +E+ + S S++D E +K+ K K+D KK +
Sbjct: 58 KRKASSSEEDDDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEK 117
Query: 507 SMTRSLDFTNNDDDGSNAENTPKHK 581
S + ++ D+D S+ E K K
Sbjct: 118 SKKKRTTSSSEDED-SDEEREQKSK 141
>AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical
protein W09G12.7 protein.
Length = 368
Score = 30.7 bits (66), Expect = 1.5
Identities = 27/118 (22%), Positives = 48/118 (40%)
Frame = +3
Query: 288 KTNEDRAKGSLTSRRRHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRK 467
K + + S +S ++ + DG K+ + + S +D +++ K+K
Sbjct: 101 KKKKSKKDSSDSSDSSDSSDSSDDGKKKKKKKSKKDSSDDSSDSSDSSDSSDSSDDDKKK 160
Query: 468 IRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHKLLDCKSAEVFXFQTEEVQFR 641
+K K K S S D +++ DD S+ E PK K K + EEV +
Sbjct: 161 KKKSKKSKNKGSSS-----DSSDSSDDSSDDEK-PKKKKKKSKKPKKAPKSDEEVTIK 212
>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform c protein.
Length = 1375
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +3
Query: 417 SHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHKLLDCK 596
S S TD+LS + + + K ++ ++ + L T DD + ++ +
Sbjct: 1222 SESQTDVLSVGDTEMQTDEKEIFTIESQTEQPSTELQETQTDDVSFAGDVPTTDQITQSE 1281
Query: 597 SAEVFXFQTE 626
SA+VF +T+
Sbjct: 1282 SAQVFDSETQ 1291
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +3
Query: 417 SHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHKLLDCK 596
S S TD+LS + + + K ++ ++ + L T DD + ++ +
Sbjct: 1222 SESQTDVLSVGDTEMQTDEKEIFTIESQTEQPSTELQETQTDDVSFAGDVPTTDQITQSE 1281
Query: 597 SAEVFXFQTE 626
SA+VF +T+
Sbjct: 1282 SAQVFDSETQ 1291
>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform a protein.
Length = 1051
Score = 29.9 bits (64), Expect = 2.6
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Frame = +2
Query: 281 FC*NKRRPSEGVFDEPPSTQHAGRAGWS--LEGDHRRRSWKH-NNKKRLSLRHRHFIRER 451
F N R SEG D PS +H GR S + RRR ++ N+ + L E
Sbjct: 80 FSTNDRYGSEGNLDMSPSRRHPGRPSSSATISNSARRRRYRSCNSPEHLESESSQLTLES 139
Query: 452 AEEEENKKIKTRRQESQ 502
EE + RQ +Q
Sbjct: 140 GSEEFRSLPRYIRQLNQ 156
>U49945-4|AAC47924.1| 535|Caenorhabditis elegans Hypothetical
protein C02H7.1 protein.
Length = 535
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Frame = +3
Query: 300 DRAKGSLTSRRRHNTQAEPDGALKETTAADHGNIITKKGS----HSDTD-ILSANEQKKR 464
D G T+R E GAL + I G SD D I++ +K +
Sbjct: 375 DEEDGDRTARIEDLVDEEDRGALVQKIMETKAEIEDGGGQDQVEESDADKIMTVEREKMK 434
Query: 465 KIRKLKLDVKKASQSMTRSLDFTNND 542
++++ D+ +++ + R DF N+D
Sbjct: 435 QLQEKLQDLTRSAYPLARLFDFANDD 460
>U41548-2|AAA83204.1| 399|Caenorhabditis elegans Hypothetical
protein M02F4.1 protein.
Length = 399
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = +2
Query: 383 RRSWKHNN--KKRLSLRHRH-----FIRERAEEEENKKIKTRRQESQSIDDQI 520
R + +HNN + R SL HR + E EEEENK K R+ DD +
Sbjct: 199 RPTRRHNNNARGRSSLNHRDEDESDYENEDYEEEENKSRKANRRSRTDDDDNL 251
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +3
Query: 489 VKKASQSMTRSLDFTNNDDDGSNAENTPKHKLLDCKSAEVFXFQTEE 629
V+ S S L T+ND D SNAE P S + F F+ EE
Sbjct: 223 VRTPSSSSDSGLS-TDNDSDRSNAEAAPPADPPSVDSTDFFSFEREE 268
>AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical
protein F32D1.9 protein.
Length = 513
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 377 HRRRSWKHNNKKRLSLRHRHFIRERAEEEENKKIKTRRQESQ 502
HR RS + +++ R R RER ++E++K ++RR + +
Sbjct: 434 HRSRSASGDRRRKRDDREREKRRERRGDDEDRKKRSRRGDEE 475
>Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical
protein C33D9.1b protein.
Length = 826
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 355 GSACVLCRRRLVKDPFARSSFVLAKYVIFDNILRN 251
GS CV C RRL K F R K+ I D +N
Sbjct: 656 GSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTKN 690
>Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical
protein C33D9.1a protein.
Length = 844
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 355 GSACVLCRRRLVKDPFARSSFVLAKYVIFDNILRN 251
GS CV C RRL K F R K+ I D +N
Sbjct: 656 GSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTKN 690
>U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical
protein C33G8.2 protein.
Length = 390
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +3
Query: 408 KKGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHK 581
KK D + KK+K +K + D ++ Q + D N+DDD + + K K
Sbjct: 129 KKQEEEDKKKEEEEKDKKKKDKKKEEDDEEEEQKDKKKKDEKNDDDDEEDKKKDKKKK 186
>U29381-3|AAA68758.2| 617|Caenorhabditis elegans Hypothetical
protein F35D11.3 protein.
Length = 617
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 486 DVKKASQSMTRSLDFTNNDDDGSNAENTPKHKLLD 590
+ K++ Q M+R N SN N+P+H+ L+
Sbjct: 18 EAKRSPQPMSRGFPQRNMSTTSSNGSNSPRHRSLE 52
>AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine
nucleotide exchangefactor FGD-1 protein.
Length = 826
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 355 GSACVLCRRRLVKDPFARSSFVLAKYVIFDNILRN 251
GS CV C RRL K F R K+ I D +N
Sbjct: 656 GSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTKN 690
>AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho
guanine nucleotideexchange factor FGD-1 protein.
Length = 844
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 355 GSACVLCRRRLVKDPFARSSFVLAKYVIFDNILRN 251
GS CV C RRL K F R K+ I D +N
Sbjct: 656 GSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTKN 690
>AF038618-9|AAB92066.1| 304|Caenorhabditis elegans Hypothetical
protein F42G8.5 protein.
Length = 304
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 288 KTNEDRAKGSLTSRRRHNTQ 347
+TN +R+KGS SRRR N+Q
Sbjct: 284 RTNSNRSKGSGRSRRRENSQ 303
>AC024817-3|AAK68524.1| 482|Caenorhabditis elegans Hypothetical
protein Y54G2A.11a protein.
Length = 482
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/87 (20%), Positives = 41/87 (47%)
Frame = +3
Query: 297 EDRAKGSLTSRRRHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIRK 476
EDR + N AEP+ ++E ++D + ++K S SD+D S ++ +
Sbjct: 21 EDRLDDDFSLNSTDNEAAEPEPIVEEPPSSDDDDTASEK-SFSDSDSDSDSDSLSESESE 79
Query: 477 LKLDVKKASQSMTRSLDFTNNDDDGSN 557
+ ++ ++ + N+D++G +
Sbjct: 80 ISEPEEEEAEEGAAAEILENSDNEGED 106
>AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-GTP
exchange factor protein.
Length = 826
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 355 GSACVLCRRRLVKDPFARSSFVLAKYVIFDNILRN 251
GS CV C RRL K F R K+ I D +N
Sbjct: 656 GSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTKN 690
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/37 (48%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 402 ITKKGS-HSDTDILSANEQKKRKIRKLKLDVKKASQS 509
I K G H D KR IRKLKL KK SQS
Sbjct: 844 IKKAGQYHIDMQKQIVKRSLKRAIRKLKLTTKKDSQS 880
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/37 (48%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 402 ITKKGS-HSDTDILSANEQKKRKIRKLKLDVKKASQS 509
I K G H D KR IRKLKL KK SQS
Sbjct: 844 IKKAGQYHIDMQKQIVKRSLKRAIRKLKLTTKKDSQS 880
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/37 (48%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 402 ITKKGS-HSDTDILSANEQKKRKIRKLKLDVKKASQS 509
I K G H D KR IRKLKL KK SQS
Sbjct: 844 IKKAGQYHIDMQKQIVKRSLKRAIRKLKLTTKKDSQS 880
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,939,548
Number of Sequences: 27780
Number of extensions: 322027
Number of successful extensions: 1322
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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