Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_B20
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.10 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.10 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   8.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 23/116 (19%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
 Frame = +3

Query: 204  LNSLRKENLCKIMDYAFRKILSNITYFAKTNEDRA--KGSLTSRRRHNTQAEPDGALKET 377
            L++ + +++  + D+ +    S  +  +  +E ++  +   +SR    T   P    + T
Sbjct: 1803 LDAGKLKHIRAVSDFIYHGTSSTSSDISPMSEQKSLPRRGRSSRSSLRTLLPPISVAETT 1862

Query: 378  -TAADHGNIITKKGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLDFTNND 542
                + GN++   G  SD   LS  E     ++KLKL ++ +  S   + +  ++D
Sbjct: 1863 FVGGNQGNVVPGNGDRSDRPELSEAECDIDSLKKLKLGLRSSLWSRPSTQNNPSSD 1918


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 23/116 (19%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
 Frame = +3

Query: 204  LNSLRKENLCKIMDYAFRKILSNITYFAKTNEDRA--KGSLTSRRRHNTQAEPDGALKET 377
            L++ + +++  + D+ +    S  +  +  +E ++  +   +SR    T   P    + T
Sbjct: 1799 LDAGKLKHIRAVSDFIYHGTSSTSSDISPMSEQKSLPRRGRSSRSSLRTLLPPISVAETT 1858

Query: 378  -TAADHGNIITKKGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLDFTNND 542
                + GN++   G  SD   LS  E     ++KLKL ++ +  S   + +  ++D
Sbjct: 1859 FVGGNQGNVVPGNGDRSDRPELSEAECDIDSLKKLKLGLRSSLWSRPSTQNNPSSD 1914


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 166 PTTQRIKSLFEQNKRVLSHFLRIYSIFFCFSPALNYTLSFQNLK 35
           P   ++   ++QN  VLS+ L +Y      S  +NY +   N+K
Sbjct: 484 PNDIKVDHEYDQNVWVLSNKLAMYLYGSIDSSKINYRIFKANVK 527


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/37 (27%), Positives = 14/37 (37%)
 Frame = -3

Query: 414 LFLLLCFHDRRRWSPSRLHPARPACCVDGGSSKTPSL 304
           L  ++CF     W   R HPA        G   T ++
Sbjct: 192 LSFVICFPPLVGWKDKRSHPAYNMTFAQNGPFNTTTI 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,626
Number of Sequences: 438
Number of extensions: 4118
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)