Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_B19
         (1011 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.064
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.15 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.60 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   9.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 33.1 bits (72), Expect = 0.064
 Identities = 32/123 (26%), Positives = 37/123 (30%), Gaps = 5/123 (4%)
 Frame = +3

Query: 657  PDXRPPPLXXXPPPVSSTKXXQXPPLSRFMXXXXY---LXPXXXXXXAPTXPHSXVXRXP 827
            P    P     PPP+SS++    PP             L P        T P       P
Sbjct: 365  PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424

Query: 828  P--PPXXAXSLPTPAPMXXXXXPSXXPXGAAXXXXXPXXAXXWVARPPRXVXXRXPPARP 1001
            P  PP    S P   PM     P+  P   +     P  A    A P        PPA  
Sbjct: 425  PSAPPSLPPSAPPSLPMGA---PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPA 481

Query: 1002 PTP 1010
            P P
Sbjct: 482  PAP 484



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 32/127 (25%), Positives = 40/127 (31%), Gaps = 4/127 (3%)
 Frame = +1

Query: 436 PXPPXXELXAXXRG---IXSXRXPXERPXPPNXXXXXXSPP-PXXGXFFLFSXXTQTXPP 603
           P PP     +  R    + S R     P PP       +P  P  G     +  T T P 
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGN----ASRTSTPPV 417

Query: 604 XKGXPNPXXSPXX*XPXXPTXAXPPYXXXXPPFPPQXXXSXPXCXGLWXXPXTLXPXPXX 783
                 P  +P    P  P  + P      PP PP    + P   G+   P  L P    
Sbjct: 418 PTPPSLPPSAPPSLPPSAPP-SLPMGAPAAPPLPPSAPIAPPLPAGMPAAP-PLPPAAPA 475

Query: 784 TPPLQXP 804
            PP   P
Sbjct: 476 PPPAPAP 482



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 38/159 (23%), Positives = 40/159 (25%), Gaps = 3/159 (1%)
 Frame = +1

Query: 496 PXERPXPPNXXXXXXSPPPXXGXFFLFSXXTQTXPPXKGX-PNPXXSPXX*XPXXPTXAX 672
           P     PP       S PP               PP  G   +P  SP    P  P    
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPR--PIAPVSMN 281

Query: 673 PPYXXXX-PPFPPQXXXSXPXCXGLWXXPXTLXPXPXXTPPLQXPIXXSSXGLLLXXXQX 849
           P       PP PP                    P P      + PI   S    L     
Sbjct: 282 PAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341

Query: 850 RSXPLPRCXXXXP-PPXXRXAPPPPXPNXXXHXXG*PAP 963
              P        P PP  R APPPP P         P P
Sbjct: 342 --PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 32/141 (22%), Positives = 38/141 (26%), Gaps = 1/141 (0%)
 Frame = +1

Query: 508 PXPPNXXXXXXSPPPXXGXFFLFSXXTQTXPPXKGXPNPXXSPXX*XPXXPTXAXPPYXX 687
           P PP        P P  G            PP +  P+    P    P   + A      
Sbjct: 340 PPPPRSNAAGSIPLPPQGR------SAPPPPPPRSAPSTGRQPP---PLSSSRAVSNPPA 390

Query: 688 XXPPFPPQXXXSXPXCXGLWXXPXTLXPXPXXTPPLQXPIXXSSXGLLLXXXQXRSXPLP 867
             P  P +   + P             P P   PP   P    S    L      + PLP
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450

Query: 868 RCXXXXPP-PXXRXAPPPPXP 927
                 PP P    A PP  P
Sbjct: 451 PSAPIAPPLPAGMPAAPPLPP 471


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 22/64 (34%), Positives = 24/64 (37%)
 Frame = +3

Query: 819  RXPPPPXXAXSLPTPAPMXXXXXPSXXPXGAAXXXXXPXXAXXWVARPPRXVXXRXPPAR 998
            + PPPP  A  +PTPAP      P   P  A      P         PP  V    PP  
Sbjct: 730  KSPPPPPPAVIVPTPAP-----APIPVPPPAPIMGGPPPPP------PPPGVAGAGPPPP 778

Query: 999  PPTP 1010
            PP P
Sbjct: 779  PPPP 782


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.60
 Identities = 34/127 (26%), Positives = 41/127 (32%), Gaps = 9/127 (7%)
 Frame = +3

Query: 657  PDXRPP-PLXXXPPPVSSTKXXQXPPLSRFMXXXXYLXPXXXXXXAPTXPHSXVXRXPPP 833
            P   PP P     PPV        PP+ +       + P      AP  P   V   P P
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAA-PPVPK---PSVAVPPVPAPSGAPPVPKPSVAAPPVP 1134

Query: 834  -PXXAXSLPTPA------PMXXXXXPSXXPXGAAXXXXXPXXAXXWVARPPRXVXXRXPP 992
             P  A  +P P+      P      P   P  AA     P      V +P   V    PP
Sbjct: 1135 VPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194

Query: 993  AR-PPTP 1010
            +  PP P
Sbjct: 1195 SEAPPVP 1201



 Score = 29.5 bits (63), Expect = 0.79
 Identities = 28/115 (24%), Positives = 35/115 (30%), Gaps = 5/115 (4%)
 Frame = +1

Query: 598  PPXKGXPNPXXSPXX*XPXXPTXAXP-PYXXXXPPFPPQXXXSXPX---CXGLWXXPXTL 765
            P     P P  S     P     A P P     PP P     + P      G+   P   
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPA 1185

Query: 766  XPXPXXTPPLQXP-IXXSSXGLLLXXXQXRSXPLPRCXXXXPPPXXRXAPPPPXP 927
               P   PP + P +   S G+        + P+P      PP     A  PP P
Sbjct: 1186 AGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 35/131 (26%), Positives = 41/131 (31%), Gaps = 2/131 (1%)
 Frame = +1

Query: 544  PPPXXGXFFLFSXXTQTXPPXKGXPN-PXXSPXX*XPXXPTXAXPPYXXXXPPFPPQXXX 720
            PPP      L S  ++  PP    P+ P   P    P  P    PP        PP    
Sbjct: 970  PPPLPVSNILSSPTSE--PPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLP 1027

Query: 721  SXPXCXGLWXXPXTLXPXPXXTPPLQXPIXXSSXGLLLXXXQXRSXPLPRCXXXXPP-PX 897
            S          P T  P P   P    P+  SS G           P+P      P  P 
Sbjct: 1028 SADAPP--IPVPSTAPPVP--IPTSTPPVPKSSSG-----APSAPPPVPAPSSEIPSIPA 1078

Query: 898  XRXAPPPPXPN 930
               APP P P+
Sbjct: 1079 PSGAPPVPAPS 1089



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 16/61 (26%), Positives = 19/61 (31%)
 Frame = +3

Query: 825  PPPPXXAXSLPTPAPMXXXXXPSXXPXGAAXXXXXPXXAXXWVARPPRXVXXRXPPARPP 1004
            P P     S+P P+       PS  P         P      VA PP       PP   P
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126

Query: 1005 T 1007
            +
Sbjct: 1127 S 1127


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 22/74 (29%), Positives = 25/74 (33%)
 Frame = +3

Query: 789  APTXPHSXVXRXPPPPXXAXSLPTPAPMXXXXXPSXXPXGAAXXXXXPXXAXXWVARPPR 968
            AP  P S + R P       S+P P+P      PS  P         P      V  PP 
Sbjct: 129  APPTPQSEL-RPPTSAPPRPSIPPPSPASAPPIPSKAPP-IPSSLPPPAQPAAPVKSPPS 186

Query: 969  XVXXRXPPARPPTP 1010
                  P A PP P
Sbjct: 187  --APSLPSAVPPMP 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,568
Number of Sequences: 5004
Number of extensions: 27529
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 525259918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)