Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_B18
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0168 + 26423464-26423790,26423828-26423941,26424366-264244...   122   4e-28
04_04_0697 + 27331643-27331693,27331798-27331917,27332007-273320...   113   2e-25
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086...    79   6e-15
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445...    72   5e-13
02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136...    58   7e-09
12_02_0999 - 25134828-25135113,25135479-25135535,25136171-251362...    29   3.8  

>02_05_0168 +
           26423464-26423790,26423828-26423941,26424366-26424448,
           26424756-26424804,26425789-26425894,26426460-26426518,
           26426604-26426678,26427112-26427160,26427253-26427329,
           26427662-26427744,26427852-26427867
          Length = 345

 Score =  122 bits (294), Expect = 4e-28
 Identities = 57/149 (38%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
 Frame = +3

Query: 123 EVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAKGLDATARGKLL 299
           ++S  +++ KQ + NACGT+ ++H++ N    ++L +G +  +F  +   +D   R   L
Sbjct: 192 DLSKRVYFTKQTVGNACGTVGVIHAIGNAASKLKLVEGSYFDRFYKQTVDMDPVQRAAFL 251

Query: 300 EKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQ 479
           E+ + + +AH   A  G T+   A   VN HF+ F   DG LYELDGRK+ P+ HGP+S 
Sbjct: 252 EEDDEMEDAHSVAASAGDTD---ANVEVNEHFVCFSCVDGELYELDGRKSQPICHGPSSP 308

Query: 480 ETLLEDAAKICKEFMARDPNEVRFTVIAL 566
           +TLL+DAAK+ K  +A +P+ + F V+AL
Sbjct: 309 DTLLQDAAKVIKARIASNPDSMNFNVMAL 337


>04_04_0697 +
           27331643-27331693,27331798-27331917,27332007-27332057,
           27332682-27332787,27333218-27333276,27333372-27333446,
           27333909-27333957,27334064-27334140,27334400-27334483
          Length = 223

 Score =  113 bits (272), Expect = 2e-25
 Identities = 53/152 (34%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
 Frame = +3

Query: 114 KGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAKGLDATARG 290
           + +++S N+++ KQ I NACGT+ ++H++ N    I+L +G +  +F  +   +D   R 
Sbjct: 72  ESKKLSKNVYFTKQTIGNACGTVGIIHAIGNALSRIKLVEGSYFDRFYKQTADMDPAQRA 131

Query: 291 KLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGP 470
             LE+ E +  AH      G T    A+D V  H++ F   D  ++ELDG  + P++HGP
Sbjct: 132 SFLEEDEEMEKAHSVAVSAGDTE---AKDGVIEHYVCFSCVDDEIFELDGGNSQPISHGP 188

Query: 471 TSQETLLEDAAKICKEFMARDPNEVRFTVIAL 566
           +S ++LL+DAAK+ K  +A+ P  + F V+AL
Sbjct: 189 SSPDSLLQDAAKVIKARIAQYPGSLNFNVMAL 220


>04_04_1513 -
           34107700-34107765,34108475-34108551,34108640-34108688,
           34109144-34109218,34109447-34109554,34109728-34109835,
           34110708-34111256
          Length = 343

 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 48/121 (39%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
 Frame = +3

Query: 138 IFYMKQ--NISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLDATARGKLLEKSE 311
           +F++KQ  ++ NACGTIAL+H+V N    I L                   R   LEK +
Sbjct: 222 LFFIKQIESLGNACGTIALLHAVGNAYSEISLCK-----------------RAVFLEKDD 264

Query: 312 GIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQETLL 491
            +  AH   A  G T      D V  H+I FV+ DG LYELDG K  P+NHGP+S ++LL
Sbjct: 265 DMARAHLSAASAGDTKL---SDDVEEHYICFVECDGTLYELDGMKPGPINHGPSSSKSLL 321

Query: 492 E 494
           +
Sbjct: 322 Q 322


>02_01_0599 -
           4455151-4455915,4455999-4456098,4456176-4456222,
           4456566-4456612,4457299-4457461,4458013-4458042
          Length = 383

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
 Frame = +3

Query: 135 NIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEG 314
           N+F+ KQ I+NAC T A+V SV  N+  I LS+  ++K    AK L    +G  +  SE 
Sbjct: 123 NLFFAKQIINNACATQAIV-SVLLNSPGITLSE-ELKKLKEFAKDLPPDLKGLAIVNSES 180

Query: 315 IINAHKELAQEG--QTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHG--PTSQE 482
           I  A    A+    +    S +D   +HFIS+V  DG LYELDG K  P++ G  P    
Sbjct: 181 IRLASNSFARPEVPEEQKSSVKDDDVYHFISYVPVDGVLYELDGLKEGPISLGKCPGGVG 240

Query: 483 TL--LEDAAKICKEFMAR-DPNEVRFTVIALV 569
            +  L     + +E + R   NE+RF+V+A++
Sbjct: 241 DIGWLRMVQPVIQERIDRFSQNEIRFSVMAIL 272


>02_05_1262 +
           35312313-35312343,35312840-35312886,35313614-35313660,
           35313740-35313842,35313924-35314691
          Length = 331

 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
 Frame = +3

Query: 135 NIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLDAT-ARGKLLEKSE 311
           N+F+  Q I NAC T A++  + N     E+  G     L E  G  A   +G  +  S+
Sbjct: 70  NLFFASQVIPNACATQAILSILMNRP---EIDIGPELSNLKEFTGAFAPDMKGLAINNSD 126

Query: 312 GIINAHKELAQE----GQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPV-----NH 464
            I  AH   A+           + +D   +HFIS++  +G LYELDG K  P+     + 
Sbjct: 127 SIRTAHNSFARPEPFVSDEQRAAGKDDEVYHFISYLPFEGVLYELDGLKEGPISLGQCSG 186

Query: 465 GPTSQETLLEDAAKICKEFMARDPNEVRFTVIALV 569
           GP   + L      I K       +E+RF ++A++
Sbjct: 187 GPDDLDWLRMVQPVIQKRIERYSQSEIRFNLMAII 221


>12_02_0999 -
           25134828-25135113,25135479-25135535,25136171-25136296,
           25136399-25137289,25137379-25137533
          Length = 504

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +3

Query: 357 NTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQE 482
           ++PSA   ++  F+S +  DG++  L+G+  F +  GP + +
Sbjct: 273 DSPSATGTMSSAFMSSLSMDGSVASLEGKPPFHLISGPVASD 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,123,564
Number of Sequences: 37544
Number of extensions: 343391
Number of successful extensions: 765
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)