Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_B18
(893 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin c-t... 125 4e-29
AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin c-t... 106 2e-23
AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin c-t... 96 3e-20
Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical pr... 66 2e-11
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p... 32 0.64
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr... 32 0.64
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr... 32 0.64
U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical p... 31 0.84
AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical ... 29 4.5
AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical ... 29 4.5
AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical ... 29 4.5
AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical ... 29 5.9
AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical ... 29 5.9
>AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 1 protein.
Length = 216
Score = 125 bits (302), Expect = 4e-29
Identities = 70/168 (41%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Frame = +3
Query: 72 YENHKKTEE--NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQ 245
+ +KK +E I + + ++F+MKQ ISNACGT AL HS+AN D I L DG
Sbjct: 51 FPEYKKVDEIMKPIYEQAKAADDSVFFMKQKISNACGTFALFHSLANLEDRINLGDGSFA 110
Query: 246 KFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGAL 425
K+L EAK + R L + + H A +GQT PS + V HHFI FV K+G L
Sbjct: 111 KWLAEAKKVGIEERSDFLANNAELAGIHAAAATDGQT-APSGD--VEHHFICFVGKNGIL 167
Query: 426 YELDGRKAFPVNHGPTSQETLLEDAAKICKEFMARDPNEVRFTVIALV 569
YE+D R+ F GPTS TL++DA C+ + + N V F+ IA+V
Sbjct: 168 YEIDSRRPFAREIGPTSDATLVKDAGAACQHLIEKLDN-VSFSAIAVV 214
>AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 3 protein.
Length = 227
Score = 106 bits (255), Expect = 2e-23
Identities = 60/162 (37%), Positives = 92/162 (56%), Gaps = 2/162 (1%)
Frame = +3
Query: 90 TEENEILSKGQEVSGNIFYMKQN--ISNACGTIALVHSVANNTDIIELSDGHMQKFLNEA 263
+++ E + K E +F+M Q+ I NACGT AL HS+AN + + L G K+ +A
Sbjct: 68 SKQYEEVEKNGEKPEGVFFMNQSEEIGNACGTFALFHSLANLENRVNLGKGKFAKWYEKA 127
Query: 264 KGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGR 443
K ++ R LL + AH+E A+EG+T D V++HFI++V K+G LYE+D
Sbjct: 128 KLVNEDERSDLLSGDTDLAEAHEETAEEGET---EQSDHVDYHFITYVNKNGQLYEIDSC 184
Query: 444 KAFPVNHGPTSQETLLEDAAKICKEFMARDPNEVRFTVIALV 569
FP G T+ T+++DA+ KE M N + F+ +ALV
Sbjct: 185 APFPRPLGATTDSTMIKDASTAIKELMNNVKN-LSFSAMALV 225
>AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 2 protein.
Length = 249
Score = 95.9 bits (228), Expect = 3e-20
Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Frame = +3
Query: 102 EILSKGQEVSGNIFYM--KQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLD 275
E+ G++ G IF+M K+ I +ACGT +L HS+AN + + L +G K+ +AK +
Sbjct: 72 EVEKNGKKPDG-IFFMNQKKEIGHACGTFSLFHSLANLENRVNLGNGKFSKWFEKAKLVG 130
Query: 276 ATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFP 455
R LL + AHKE A+EG+T P + V +HFI++V K+G L+E+D FP
Sbjct: 131 EGERSDLLLADTDLAEAHKETAEEGETEHP---EHVAYHFITYVNKNGQLFEIDSCSPFP 187
Query: 456 VNHGPTSQETLLEDAAKICKEFMARDPNEVRFTVIAL 566
G T+ T++ DA + + + ++ F+ +AL
Sbjct: 188 RPLGATTDSTMIRDAFSTSIKDLMDNVQKLSFSAMAL 224
>Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical
protein C08B11.7 protein.
Length = 321
Score = 66.5 bits (155), Expect = 2e-11
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 4/149 (2%)
Frame = +3
Query: 135 NIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEG 314
NIF+ Q I NAC T AL++ + N D + ++ A LD RG L SE
Sbjct: 71 NIFFAHQTIQNACATQALINLLMNVEDTDVKLGNILNQYKEFAIDLDPNTRGHCLSNSEE 130
Query: 315 IINAHKELAQEG--QTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQETL 488
I H +++ + + E N+HF+++V +YELDG + P+ +E
Sbjct: 131 IRTVHNSFSRQTLFELDIKGGESEDNYHFVTYVPIGNKVYELDGLRELPLEVAEFQKEQD 190
Query: 489 LEDAAK--ICKEFMARDPNEVRFTVIALV 569
+A K I + E+ F ++ALV
Sbjct: 191 WIEAIKPVIQQRMQKYSEGEITFNLMALV 219
>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
protein F36H1.2c protein.
Length = 1427
Score = 31.9 bits (69), Expect = 0.64
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 225 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 371
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1051 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1099
>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
F36H1.2b protein.
Length = 1379
Score = 31.9 bits (69), Expect = 0.64
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 225 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 371
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070
>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
F36H1.2a protein.
Length = 1398
Score = 31.9 bits (69), Expect = 0.64
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 225 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 371
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070
>U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical
protein C32E8.9 protein.
Length = 268
Score = 31.5 bits (68), Expect = 0.84
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +3
Query: 198 VANNTDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED 377
+ ++TDI G F G+ + G E EGI+ + LA G+ N SAE+
Sbjct: 135 ICSSTDIRIAHSGSKIAFFQSKMGIVPSWGGA--EYMEGIMGRGRALAAMGRANVMSAEE 192
Query: 378 PVNHHFISFVQK 413
+ ++ +V K
Sbjct: 193 AKDQGYVDYVYK 204
>AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical
protein Y71H10B.1c protein.
Length = 570
Score = 29.1 bits (62), Expect = 4.5
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +3
Query: 66 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 233
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 316 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 373
Query: 234 --GHMQKFLNEA-KGLDATARGKLLEK 305
GHM+ L + K LD +R K + K
Sbjct: 374 EMGHMESTLADIYKNLDGASRHKPVVK 400
>AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical
protein Y71H10B.1a protein.
Length = 556
Score = 29.1 bits (62), Expect = 4.5
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +3
Query: 66 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 233
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 302 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 359
Query: 234 --GHMQKFLNEA-KGLDATARGKLLEK 305
GHM+ L + K LD +R K + K
Sbjct: 360 EMGHMESTLADIYKNLDGASRHKPVVK 386
>AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical
protein Y71H10B.1b protein.
Length = 559
Score = 29.1 bits (62), Expect = 4.5
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +3
Query: 66 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 233
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 305 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 362
Query: 234 --GHMQKFLNEA-KGLDATARGKLLEK 305
GHM+ L + K LD +R K + K
Sbjct: 363 EMGHMESTLADIYKNLDGASRHKPVVK 389
>AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical
protein C54E4.2a protein.
Length = 226
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -1
Query: 413 FLDKADKMMVDGIFST--WCICLAF 345
F+D D M+VDG S WC C F
Sbjct: 116 FIDMCDDMVVDGSISVDEWCDCFTF 140
>AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical
protein C54E4.2b protein.
Length = 234
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -1
Query: 413 FLDKADKMMVDGIFST--WCICLAF 345
F+D D M+VDG S WC C F
Sbjct: 124 FIDMCDDMVVDGSISVDEWCDCFTF 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,139,200
Number of Sequences: 27780
Number of extensions: 324797
Number of successful extensions: 933
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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