Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_B13
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   0.073
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.17 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.40 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.5  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect(2) = 0.073
 Identities = 21/61 (34%), Positives = 23/61 (37%)
 Frame = +3

Query: 729 PXPKPPPPXXPPXXXPTLXXPXGXKXXXKXPXTGXTXKRXXFRXFXPXPPPXRVXXPPPP 908
           P P PPPP  PP   PTL  P       + P           +   P PPP     PP P
Sbjct: 234 PLPAPPPP--PP---PTL--PPQSTNTSQLPMPSRNVNNLGSQVNIP-PPPATPSQPPRP 285

Query: 909 P 911
           P
Sbjct: 286 P 286



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 726 PPXPKPPPPXXPPXXXPTLXXP 791
           P  P PPPP  PP    T   P
Sbjct: 236 PAPPPPPPPTLPPQSTNTSQLP 257



 Score = 23.0 bits (47), Expect(2) = 0.073
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 726 PPXPKPPPP 752
           PP P PPPP
Sbjct: 189 PPPPPPPPP 197


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 18/58 (31%), Positives = 18/58 (31%)
 Frame = +3

Query: 738 KPPPPXXPPXXXPTLXXPXGXKXXXKXPXTGXTXKRXXFRXFXPXPPPXRVXXPPPPP 911
           K PPP  PP        P G               R       P PP  R   PPPPP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
 Frame = +3

Query: 726 PPXPKPP------PPXXPPXXXPTLXXPXGXKXXXKXPXTGXTXKRXXFRXFXPXPPPXR 887
           PP P PP      PP  PP   P+L  P G       P +             P  PP  
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSL--PMGAPAAPPLPPSAPI--APPLPAGMPAAPPLP 470

Query: 888 VXXPPPPP 911
              P PPP
Sbjct: 471 PAAPAPPP 478



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 854 PXXSPXPPPPXGXXSSPP 907
           P   P PPP  G  SSPP
Sbjct: 251 PAPPPIPPPSNGTVSSPP 268


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
 Frame = +3

Query: 726  PPXPKPP---PPXXPPXXXPTLXXPXGXKXXXKXPXTGXTXKRXXFRXFXPXPPPXRVXX 896
            PP PKP    PP   P   P +  P         P +G            P PPP     
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199

Query: 897  PPPP 908
             P P
Sbjct: 1200 VPKP 1203


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 726 PPXPKPPPPXXPPXXXPTLXXP 791
           PP P PPP   PP   P    P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 729 PXPKPPPPXXPPXXXPTLXXPXG 797
           P P PPPP   P   P    P G
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,694,905
Number of Sequences: 5004
Number of extensions: 19820
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)