Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_B12
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 45 2e-05
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 40 7e-04
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 36 0.011
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 32 0.099
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 32 0.13
SPBC216.06c |swi1||replication fork protection complex subunit S... 30 0.40
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 29 1.2
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 28 2.1
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 28 2.1
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 27 2.8
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb... 27 3.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 4.9
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 26 6.5
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c... 26 8.6
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 44.8 bits (101), Expect = 2e-05
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Frame = +1
Query: 295 LDLSYNSIETLKGLEQFARLEELI-LDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLV 471
LDL + I ++ L + + I +N + FP++ L+TL NN+I + +
Sbjct: 23 LDLRWYQIPIIENLGVLRDVHDAIDFTDNDIRYLGNFPRMKRLQTLLCGNNRITAIAPDI 82
Query: 472 DKIRENFPVLS----YLSLLSN----KACPN--QLSDVDKDDSDYQRYRYYVIYKIPHLR 621
K+ N LS +L +++ +CP LS +D + Q YR Y+I++IP L
Sbjct: 83 GKVLPNLKTLSLAQNHLQEIADLDPLASCPQLTNLSCIDNPVAQKQYYRLYLIWRIPSLH 142
Query: 622 FLD 630
LD
Sbjct: 143 ILD 145
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 39.5 bits (88), Expect = 7e-04
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +1
Query: 295 LDLSYNSIETLKGLEQFARLEELILDNNQL--SDGIKFPKLPYLKTLSLNNNQIANL 459
LD+SYN +E L GL L EL +D+N L DGI+ L L LS NN+I L
Sbjct: 673 LDISYNQLEDLTGLSSLIHLRELKVDSNHLWSLDGIQ--HLDGLLKLSACNNRIKEL 727
Score = 35.5 bits (78), Expect = 0.011
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 349 RLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLE 462
RLEEL+L NN++ + + L L L L+NN++ NL+
Sbjct: 736 RLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLK 773
Score = 33.5 bits (73), Expect = 0.043
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = +1
Query: 220 LSYCGQDCKKIPPALQKMYGAKVKCLDLSYNSIETLKGLEQFARLEELILDNNQLSDGIK 399
LS C K++ ++ +++ L L N IE ++ + L L LDNN+L++
Sbjct: 717 LSACNNRIKELSFTNSNLH--RLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKA 774
Query: 400 FPKLPYLKTLSLNNNQIANLE 462
+ +L+ L ++NN I LE
Sbjct: 775 SQPMIHLRILRISNNAIHQLE 795
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 35.5 bits (78), Expect = 0.011
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 295 LDLSYNSIETLKGLEQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDL 468
LDLS+N+I+T++ + LE L N++ L L L L N+I +E+L
Sbjct: 109 LDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELGGNKIRVIENL 166
Score = 34.7 bits (76), Expect = 0.019
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +1
Query: 286 VKCLDLSYNSIETLK--GLEQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANL 459
V C++L + I+++ GLE+F L+ L L NQ+ P+ L L L +N I +
Sbjct: 40 VDCVELIQSRIQSMASLGLERFKNLQSLCLRQNQIKKIESVPET--LTELDLYDNLIVRI 97
Query: 460 EDLVDKIRENFPVLSYLSLLSN 525
E+L +N L+YL L N
Sbjct: 98 ENL-----DNVKNLTYLDLSFN 114
Score = 32.3 bits (70), Expect = 0.099
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +1
Query: 295 LDLSYNSIETLKGLEQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVD 474
L +S+N + + G+E LE L + NN + L L L +NN++++ +++ D
Sbjct: 220 LYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYLAGLKNLVELWASNNELSSFQEIED 279
Query: 475 KI 480
++
Sbjct: 280 EL 281
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 32.3 bits (70), Expect = 0.099
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +1
Query: 301 LSYNSIETLKGLE-QFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVDK 477
LS N + +L E +EEL L +N+L + F L Y K L + N L ++ K
Sbjct: 790 LSGNPVSSLSSQEFVMPTVEELYLVDNRLGNDC-FTALEYFKCLKVLNLSYNYLTEIPSK 848
Query: 478 IRENFPVLSYLSLLSNK 528
+NF L +L + N+
Sbjct: 849 FFQNFSDLKHLFVSGNE 865
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 31.9 bits (69), Expect = 0.13
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 304 SYNSIETLKGLEQFA-RLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVDKI 480
+++ +E + GL+ + E+ LD + + K+P L L LN N+ + +D+VD+I
Sbjct: 267 AFSKLENI-GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEI 325
Query: 481 RENF 492
RE F
Sbjct: 326 REVF 329
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 30.3 bits (65), Expect = 0.40
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 496 VLSYLSLLSNKACPNQLSDVDKDDSDYQRYR 588
+LS L L++N CP LSD DKD ++Y+ +R
Sbjct: 58 LLSSLQLVTNDICPI-LSDWDKDITNYRNWR 87
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 28.7 bits (61), Expect = 1.2
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 412 PYLKTLSLNNNQIANLEDLVD-KIRENFPVLSYLSLLSNKACPNQLSDVDKDDSDYQRYR 588
P L LSL NN+I +L DL + P L L L+ N ++ DYQR
Sbjct: 240 PKLLNLSLANNRITSLSDLDPWSPKTKLPELQELVLVGNPI----VTTFANRAMDYQR-- 293
Query: 589 YYVIYKIPHLRFLD 630
++ + P LR LD
Sbjct: 294 -EMVSRFPKLRLLD 306
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 403 PKLPYLKTLSLNNNQIANLEDLVDKIRENFPVLSYLSLLSN 525
PK K + +Q A+ +D+++K++ + P+L YL+ N
Sbjct: 121 PKFQEFKVQRESYSQTASNDDVIEKLQTSTPLLQYLAEKKN 161
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 27.9 bits (59), Expect = 2.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 268 SVRPVEFFYSLARNSLERYW*RIKQN 191
+ + FFY L +N L++ W R++ N
Sbjct: 172 NTKKTRFFYPLGKNCLQKLWGRVETN 197
>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 498
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 499 LSYLSLLSNKACPNQLSDVDKDDSDYQRYR 588
++Y+ LSN P+ +SD D DD D +R
Sbjct: 407 VNYIQPLSNANGPSAVSDSDDDDDDPNDFR 436
>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 487 NFPVLSYLSLLSNKACPNQLSDVDKDDSDYQRYRYYVIYKIPHLRFLDS 633
N P + + S+ A + LS + D +Q+Y +Y + P+L F+D+
Sbjct: 169 NLPSIICPTTASSDAATSSLSVIYTPDGQFQKYSFYPLN--PNLIFIDT 215
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 4.9
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 298 DLSYNSIET-LKGLEQFARLEELILDNNQLSDGIKFPKLPYLKT-LSLNNNQIAN 456
DLS +ET LKG E ++ ++ I DN++ P++ ++T S+ N I N
Sbjct: 155 DLSKEDLETTLKGDENYSSSQKEIYDNDETIPKPPSPEVEKIETSTSVENAYITN 209
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +1
Query: 436 NNNQIANLEDLVDKIRENFPVLSYLSLLSNKACPNQLSDVDKDDSDYQ 579
NN+ I + E ++++ +EN ++ L + + SD+ + +SD Q
Sbjct: 402 NNSMIRDSESIINERKENIGLIGVKRSLHDSTTSHNKSDLMRTNSDPQ 449
>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 8.6
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +1
Query: 346 ARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVDKIRENFPVLSYLSLLSN 525
A E L+L +NQ S K ++ + L NN +A+ L + + L Y+SL+ N
Sbjct: 67 ALFERLLLSSNQKSTS-KSNQM-----IKLLNNSLAHNNGLPSQRCNHDSKLVYMSLVQN 120
Query: 526 KACPNQLSD 552
P Q S+
Sbjct: 121 NGLPGQRSN 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,150
Number of Sequences: 5004
Number of extensions: 56827
Number of successful extensions: 177
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -