Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_B12
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    30   0.026
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   5.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   9.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 30.3 bits (65), Expect = 0.026
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +1

Query: 166 NMEETHINNFALSFTNNVLSYCGQDCKKIPPA--LQKMYGAKVKCLDLSYNSIETLKGLE 339
           N+ E HI  F  +F    L +       I       K+  +KVK LD S+N I  L  L 
Sbjct: 555 NLSENHIEWFDYAFIPGNLKWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPLS 614

Query: 340 QFARLEELILDNNQLS 387
               +E L ++NN ++
Sbjct: 615 VPDSVELLFINNNYIN 630



 Score = 27.5 bits (58), Expect = 0.18
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
 Frame = +1

Query: 286 VKCLDLSYNSIETLK--GLEQFARLEELILDNNQLSD--GIKFPKLPYLKTLSLNNNQI 450
           ++ L+L+ N ++ ++    E+  RLE + LD N LSD  G+ F  +  L  L+L+ N I
Sbjct: 504 LQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGV-FTSIASLLLLNLSENHI 561


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 190 NFALSFTNNVLSYCGQDCKKIPPAL 264
           N+ + + +NVL Y   D   +PPA+
Sbjct: 122 NYEVRYKSNVLIYPNGDVLWVPPAI 146


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +1

Query: 328 KGLEQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVDKIRENFPVLSY 507
           +GLE    L E+I D + + D  KF  +  +KT+       + + +  +   E+ P   +
Sbjct: 809 QGLECLRFLNEVISDFDAILDQNKFKDIIKIKTIGSTYMAASGITESAES--EDGPRWGH 866

Query: 508 LSLL 519
           LS L
Sbjct: 867 LSTL 870


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 367 KSTPPASRTVRDPLMFRYCCNLDLNI 290
           K+    S TV+     +YC N+ LNI
Sbjct: 93  KNCNAGSLTVKKNFANKYCGNITLNI 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,326
Number of Sequences: 438
Number of extensions: 4403
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)