Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_B10
(1024 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.33
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.33
AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein... 29 5.3
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 7.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 7.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 7.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 7.1
U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical pr... 28 9.3
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 28 9.3
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 28 9.3
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.1 bits (72), Expect = 0.33
Identities = 23/69 (33%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Frame = +3
Query: 261 PXXDPPLRNPXGPXGTXXXXXPGPRARXXPXGGXXRRPXXLXGXRDP---PPPXXXXXPX 431
P PP R P GP G P P +R P G P G R P PPP P
Sbjct: 299 PPPPPPGRTP-GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPS 357
Query: 432 THXXDQXPP 458
PP
Sbjct: 358 AGPGMYPPP 366
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.1 bits (72), Expect = 0.33
Identities = 23/69 (33%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Frame = +3
Query: 261 PXXDPPLRNPXGPXGTXXXXXPGPRARXXPXGGXXRRPXXLXGXRDP---PPPXXXXXPX 431
P PP R P GP G P P +R P G P G R P PPP P
Sbjct: 309 PPPPPPGRTP-GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPS 367
Query: 432 THXXDQXPP 458
PP
Sbjct: 368 AGPGMYPPP 376
>AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein 2
protein.
Length = 298
Score = 29.1 bits (62), Expect = 5.3
Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Frame = +3
Query: 279 LRNPXGPXG-TXXXXXPGPRARXXPXGGXXRRPXXLXGXRDPPPPXXXXXPXTHXXDQXP 455
+ P GP G PGPR GG P G P P P Q P
Sbjct: 220 INGPAGPAGHKGVRGPPGPRGEAGLDGGNSEGPQGPQGDAGRPGPVGEQGPQGPEGPQGP 279
Query: 456 P 458
P
Sbjct: 280 P 280
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 28.7 bits (61), Expect = 7.1
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +3
Query: 270 DPPLRNPXGPXGTXXXXXPGPRARXXPXGGXXRRPXXLXGXRDPPPP 410
DP P GP G PGP P P G DP P
Sbjct: 1192 DPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGSNGPSDPNKP 1238
Score = 28.3 bits (60), Expect = 9.3
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +3
Query: 270 DPPLRNPXGPXGTXXXXXPGPRARXXPXGGXXRRPXXLXGXRDPPPP 410
DP P GP G PGP P P G DP P
Sbjct: 1052 DPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPNKP 1098
Score = 28.3 bits (60), Expect = 9.3
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +3
Query: 270 DPPLRNPXGPXGTXXXXXPGPRARXXPXGGXXRRPXXLXGXRDPPPP 410
DP P GP G PGP P P G DP P
Sbjct: 1080 DPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPNKP 1126
Score = 28.3 bits (60), Expect = 9.3
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +3
Query: 270 DPPLRNPXGPXGTXXXXXPGPRARXXPXGGXXRRPXXLXGXRDPPPP 410
DP P GP G PGP P P G DP P
Sbjct: 1108 DPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPNKP 1154
Score = 28.3 bits (60), Expect = 9.3
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +3
Query: 270 DPPLRNPXGPXGTXXXXXPGPRARXXPXGGXXRRPXXLXGXRDPPPP 410
DP P GP G PGP P P G DP P
Sbjct: 1262 DPNRPGPNGPNGPLDPNKPGPNGPNGPSDPNKPGPNGPNGPSDPNKP 1308
Score = 28.3 bits (60), Expect = 9.3
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +3
Query: 270 DPPLRNPXGPXGTXXXXXPGPRARXXPXGGXXRRPXXLXGXRDPPPP 410
DP P GP G PGP P P G DP P
Sbjct: 1290 DPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPNKP 1336
Score = 28.3 bits (60), Expect = 9.3
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +3
Query: 270 DPPLRNPXGPXGTXXXXXPGPRARXXPXGGXXRRPXXLXGXRDPPPP 410
DP P GP G PGP P P G DP P
Sbjct: 1332 DPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGSSDPNKP 1378
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 7.1
Identities = 30/109 (27%), Positives = 33/109 (30%)
Frame = +2
Query: 329 AXGXGVPXRXGXPSXXXSXRXQGPXPXGXXXXPPXXXRRPAPXPTXPRXGXXLXXXXGAX 508
A G P R G P + P P G PP P P P PR
Sbjct: 260 AAGSPPPPRTGSPPPPPTGSPP-PPPAGGSPPPPRAGSPPPPPP--PRGS---PPTGSLP 313
Query: 509 XGEAXGXVXPPPTXXPXXXPAXLXFFXPASTXSXXPGPGXXXXGRPAPR 655
+A G P T P P S + P G GRP PR
Sbjct: 314 PPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP-PR 361
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 7.1
Identities = 30/109 (27%), Positives = 33/109 (30%)
Frame = +2
Query: 329 AXGXGVPXRXGXPSXXXSXRXQGPXPXGXXXXPPXXXRRPAPXPTXPRXGXXLXXXXGAX 508
A G P R G P + P P G PP P P P PR
Sbjct: 281 AAGSPPPPRTGSPPPPPTGSPP-PPPAGGSPPPPRAGSPPPPPP--PRGS---PPTGSLP 334
Query: 509 XGEAXGXVXPPPTXXPXXXPAXLXFFXPASTXSXXPGPGXXXXGRPAPR 655
+A G P T P P S + P G GRP PR
Sbjct: 335 PPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP-PR 382
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 7.1
Identities = 30/109 (27%), Positives = 33/109 (30%)
Frame = +2
Query: 329 AXGXGVPXRXGXPSXXXSXRXQGPXPXGXXXXPPXXXRRPAPXPTXPRXGXXLXXXXGAX 508
A G P R G P + P P G PP P P P PR
Sbjct: 266 AAGSPPPPRTGSPPPPPTGSPP-PPPAGGSPPPPRAGSPPPPPP--PRGS---PPTGSLP 319
Query: 509 XGEAXGXVXPPPTXXPXXXPAXLXFFXPASTXSXXPGPGXXXXGRPAPR 655
+A G P T P P S + P G GRP PR
Sbjct: 320 PPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP-PR 367
>U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical
protein C16B8.3 protein.
Length = 164
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -1
Query: 967 GXVXAPPXPXGQXXGPPPPXGXXA 896
G PP P G PPPP G A
Sbjct: 49 GYAPPPPRPYGATYAPPPPMGIGA 72
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +3
Query: 906 PXGGGGPXSXP-XGXGGAXTXPXXHXXXPA 992
P GGGGP P G GG T P PA
Sbjct: 621 PGGGGGPPRGPGGGGGGGPTGPPAPPKPPA 650
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +3
Query: 906 PXGGGGPXSXP-XGXGGAXTXPXXHXXXPA 992
P GGGGP P G GG T P PA
Sbjct: 621 PGGGGGPPRGPGGGGGGGPTGPPAPPKPPA 650
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,077,895
Number of Sequences: 27780
Number of extensions: 196160
Number of successful extensions: 615
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2699257404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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