Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_B09
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    27   4.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   7.3  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   9.6  
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    25   9.6  

>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 62  IFLFVNVKYLIKVIIYSN-RL*WKTY*TRLFHRKICK 169
           ++L VNV+  IK I+Y N  L W  +   + + K+C+
Sbjct: 14  LYLMVNVQCRIKEIMYWNICLYWDVFSKLIIYNKVCQ 50


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 93  SKLSFIVTGYNGRRIRRDCFIGRFAKIRKGLS*TIAP 203
           SKLSFI + +   RI +D F    A IR  L  ++ P
Sbjct: 865 SKLSFIGSNHTRYRIDKDEFSSGIASIRGTLMSSVLP 901


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 127 EDVLDEIVSSEDLQKFERVFHEQLHQGNV 213
           E++ D +VS E+L+K  RVF +   +GNV
Sbjct: 217 EEIRDLLVS-EELRKPARVFEDTSRRGNV 244


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 151 SSEDLQKFERVFHEQLHQGNVXHKAQFE 234
           +  +++  E++ HEQL++ N   K +FE
Sbjct: 162 NQREVESLEQLVHEQLNKLNTESKMEFE 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,143
Number of Sequences: 5004
Number of extensions: 32472
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)