Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_B06
(914 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 239 3e-63
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 237 7e-63
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 29 3.9
02_01_0295 - 1973115-1973404,1974138-1974663 29 3.9
02_05_0956 - 33064104-33066425 28 9.0
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 28 9.0
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 239 bits (584), Expect = 3e-63
Identities = 118/190 (62%), Positives = 144/190 (75%), Gaps = 4/190 (2%)
Frame = +1
Query: 91 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 270
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 271 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 444
FPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120
Query: 445 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHK 618
++PGLTD PR GPKRASKIRKLFNL+K+DDVR+YV +R K GK+ + K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVS----K 176
Query: 619 APKIQRLVTP 648
APKIQRLVTP
Sbjct: 177 APKIQRLVTP 186
Score = 31.9 bits (69), Expect = 0.73
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2
Query: 713 SSXAEYAKLLAQRKKESKVRRQEXI 787
S AEY KLLAQR KE + RR E +
Sbjct: 208 SEAAEYQKLLAQRLKEQRERRSESL 232
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 237 bits (581), Expect = 7e-63
Identities = 118/190 (62%), Positives = 143/190 (75%), Gaps = 4/190 (2%)
Frame = +1
Query: 91 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 270
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 271 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 444
FPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120
Query: 445 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHK 618
++PGLTD PR GPKRASKIRKLFNLSK+DDVR+YV +R K GK+ + K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVS----K 176
Query: 619 APKIQRLVTP 648
APKIQRLVTP
Sbjct: 177 APKIQRLVTP 186
Score = 31.9 bits (69), Expect = 0.73
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2
Query: 713 SSXAEYAKLLAQRKKESKVRRQEXI 787
S AEY KLLAQR KE + RR E +
Sbjct: 208 SEAAEYQKLLAQRLKEQRERRSESL 232
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/53 (24%), Positives = 32/53 (60%)
Frame = +1
Query: 484 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 642
++ PK+A ++ + + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 29.5 bits (63), Expect = 3.9
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +1
Query: 328 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLGPKR 501
G S + + G ++ RG + + S AL + GA PG +P R+G +
Sbjct: 167 GKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK 224
Query: 502 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 591
+KIRKL + ++D++ ++K +P K G
Sbjct: 225 -TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253
>02_05_0956 - 33064104-33066425
Length = 773
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 585 LGWEHAFDDITTYIIFFAKV 526
+G EHA DD++TYII A V
Sbjct: 23 VGVEHATDDVSTYIIHVAHV 42
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 742 CTEKEGIQGASPGKXQTQAV 801
C KE IQGA+PG Q Q +
Sbjct: 599 CLNKEAIQGANPGDSQMQII 618
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,592,294
Number of Sequences: 37544
Number of extensions: 487500
Number of successful extensions: 1342
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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