Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_B05
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    27   2.8  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    27   3.8  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   6.6  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   8.7  

>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 666 RPCRLPDTCPPFSLREAWRFLIAHAVGISVRCXSFAPSWAVCTNPPFSPTAAPYPV 833
           R   L +T  PFS++   RF I HA   +VR    A  W +  +  F    +P+ +
Sbjct: 434 RSILLVNTNEPFSMKT--RFKIQHATEWNVRVVGVAWLWNIIQSGKFIDQVSPWAI 487


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 26/94 (27%), Positives = 36/94 (38%)
 Frame = +2

Query: 599 NPTGL*RYQAFPPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSVXVVRSK 778
           N   + R  A  P S    SP P++PL G  +    + S A   +       S   V  +
Sbjct: 229 NAAAIVRKSAVTPSSDPYNSPPPSIPLLGSQTNLQLAPSFAAPQAHPLPSHLSQSNVPPQ 288

Query: 779 LGCVHEPPVQPDRCALSGTIVLSQPVXQXXXSHV 880
           L     P   P R ++S     SQP+ Q   S V
Sbjct: 289 LSHSSVPSPAPPR-SVSQPTYFSQPMPQFSSSFV 321


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 721 RHASRREKGGQV---SGKRQGRNRRAHEGASR 635
           +   RRE+GG+V   SG+ + R+   HE  SR
Sbjct: 95  KRGGRRERGGRVHGDSGRLRSRSPSPHEARSR 126


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 560 EHHKNRRSSQRWRNPTGL*RYQAF----PPGSSLVRSPVPTLPLTGY 688
           ++HKNR+S+     P GL  Y+A     PPG     +      L GY
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGY 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,250,844
Number of Sequences: 5004
Number of extensions: 64624
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)