Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_B03
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    58   1e-09
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    58   1e-09
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    49   1e-06
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   6.5  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.5  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   8.5  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 23/47 (48%), Positives = 33/47 (70%)
 Frame = +2

Query: 74  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR 214
           MK+ +C++SG K+YPG G+  V+ D K F F+N K E+  L R+NPR
Sbjct: 1   MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPR 47



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 24/53 (45%), Positives = 29/53 (54%)
 Frame = +3

Query: 216 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 374
           +++WTVLYRR  KKG  EE               IVGA+L  I  KRN +PEV
Sbjct: 48  RLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 23/47 (48%), Positives = 33/47 (70%)
 Frame = +2

Query: 74  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR 214
           MK+ +C++SG K+YPG G+  V+ D K F F+N K E+  L R+NPR
Sbjct: 1   MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPR 47



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 24/53 (45%), Positives = 29/53 (54%)
 Frame = +3

Query: 216 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 374
           +++WTVLYRR  KKG  EE               IVGA+L  I  KRN +PEV
Sbjct: 48  RLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = +2

Query: 74  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR 214
           M++  C +    +YPGHG   V+ D K F F  SKC     M+RNPR
Sbjct: 1   MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPR 47


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 184 SRPFDEEESSLK*HGLSCTGASSKRAKRKNKQRNV 288
           S+ F EE   L   G +CT   S++ ++KN + N+
Sbjct: 421 SQFFQEEMIHLLEMGEACTSRESQKTRKKNLKENI 455


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = -2

Query: 346 IMSLSEAPTIARWNFWVLL---VRFFACSSSWPFLNLRLYRTVHVTLARI 206
           I++L      A W  W  +   V      S W  L+  L +  H+TLA+I
Sbjct: 600 IVALQNMDPAAGWGEWFAVSIPVSLLCIFSIWFLLSFGLLKDEHITLAKI 649


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 160 EGFSIHFNHGLAMAWIYFVSTI 95
           +GF  H+  G A+ W+YF + +
Sbjct: 430 DGFHKHYLPGTAIDWVYFAADV 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,503
Number of Sequences: 5004
Number of extensions: 35124
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)