Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_B02
(901 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1048 + 25675563-25675760,25676995-25677051,25677132-256773... 159 2e-39
03_02_0194 + 6322499-6322654,6323540-6323596,6323702-6323907,632... 142 5e-34
10_08_0045 + 14407892-14408068,14408759-14408815,14408899-144091... 140 1e-33
01_06_0875 - 32650150-32650350,32650464-32650788,32650872-326510... 134 7e-32
04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153 31 1.6
04_03_0717 - 18999057-18999175,18999267-18999303,18999453-189996... 29 3.8
12_01_1054 + 10847342-10847543,10847627-10847962,10848557-108488... 28 8.8
11_06_0080 - 19880319-19880957,19881800-19881948,19882266-198835... 28 8.8
03_02_0423 + 8321076-8322164 28 8.8
>12_02_1048 +
25675563-25675760,25676995-25677051,25677132-25677331,
25677412-25677541,25677642-25677845,25678017-25678088,
25678379-25678546
Length = 342
Score = 159 bits (387), Expect = 2e-39
Identities = 79/192 (41%), Positives = 127/192 (66%), Gaps = 1/192 (0%)
Frame = +1
Query: 265 VVLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITNTYQAS 444
+V+DGG +T+L + + DPLWSA+ + + P+ V HLD+L AGA++IIT +YQA+
Sbjct: 30 LVMDGGLATELEANGADL--NDPLWSAKCLLSSPHLVRKVHLDYLEAGANIIITASYQAT 87
Query: 445 VEGFVEHLGVTKEQGYELIARAVQLAKQARTLYLEEYRDYVQNDDIPLIVGSVGPYGAHL 624
++GF E G +KEQ +L+A++V++A++AR ++L+E+ D I L+ S+G YGA+L
Sbjct: 88 IQGF-ESKGFSKEQSEDLLAKSVEIAREARDMFLKEHSDRPIQHPI-LVAASIGSYGAYL 145
Query: 625 HDGSEYDGSYADTTSIETMREWHRPRIQALVEAGVDLLALETIPCQEEXETLCDLLREFP 804
DGSEY G Y + ++E ++++H+ R++ L EAG DL+A ETIP + E + +LL E
Sbjct: 146 ADGSEYSGDYGEAGTLEFLKDFHKRRLEVLAEAGPDLIAFETIPNKLEAQAYVELLDECN 205
Query: 805 -GTKGWLXFSCK 837
W F+ K
Sbjct: 206 ISIPAWFSFNSK 217
>03_02_0194 +
6322499-6322654,6323540-6323596,6323702-6323907,
6324028-6324157,6324285-6324488,6324599-6324670,
6324844-6325008
Length = 329
Score = 142 bits (343), Expect = 5e-34
Identities = 77/190 (40%), Positives = 118/190 (62%), Gaps = 2/190 (1%)
Frame = +1
Query: 268 VLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITNTYQASV 447
V+DGGF+TQL +G I+ DPLWSA + T P+ + H+ +L AGAD+II+++YQA++
Sbjct: 17 VIDGGFATQLEA-LGADIN-DPLWSAACLITKPHLIKEVHMQYLEAGADVIISSSYQATI 74
Query: 448 EGFVEHLGVTKEQGYELIARAVQLAKQARTLYLEE-YRDYVQNDDIPLIVGSVGPYGAHL 624
GF+ G+ E+ L+ R+++LA +AR + + R + L+ S+G YGA+L
Sbjct: 75 PGFLAR-GMLLEEAEGLLRRSIELALEARDEFWKSTLRKSKPVYNRALVAASIGSYGAYL 133
Query: 625 HDGSEYDGSYADTTSIETMREWHRPRIQALVEAGVDLLALETIPCQEEXETLCDLLREFP 804
DGSEY GSY + + E ++++HR R+Q L AG DL+A E IP + E + L +LL E
Sbjct: 134 ADGSEYSGSYGEDITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNKMEAQALVELLEEEN 193
Query: 805 -GTKGWLXFS 831
W+ FS
Sbjct: 194 IQVPSWICFS 203
>10_08_0045 +
14407892-14408068,14408759-14408815,14408899-14409125,
14409271-14409400,14409848-14410051,14410127-14410198,
14410468-14410608
Length = 335
Score = 140 bits (340), Expect = 1e-33
Identities = 78/199 (39%), Positives = 118/199 (59%), Gaps = 9/199 (4%)
Frame = +1
Query: 268 VLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITNTYQASV 447
V+DGG +T+L + + D LWSAR + T P+ + HLD+L AGA ++IT +YQA++
Sbjct: 24 VIDGGLATELEANGADLKDA--LWSARCLFTCPDLIRKVHLDYLEAGASVLITGSYQATI 81
Query: 448 EGFVEHLGVTKEQGYELIARAVQLAKQARTLYLE-------EYRDYVQNDDIP-LIVGSV 603
+GF+ G ++E+ + R+V+LA +AR +YLE E +D + P LI SV
Sbjct: 82 QGFLSK-GFSQEESESFLRRSVELACEARAIYLEKCSNGSDEAKDVTKYRKRPILIAASV 140
Query: 604 GPYGAHLHDGSEYDGSYADTTSIETMREWHRPRIQALVEAGVDLLALETIPCQEEXETLC 783
G YGA+L DGSEY G Y + ++E ++ +H R+Q L EAG D++ ETIP + E +
Sbjct: 141 GSYGAYLADGSEYSGDYGNEGTLEFLKNFHLRRLQVLAEAGPDVIVFETIPNKIETQAYV 200
Query: 784 DLLREFP-GTKGWLXFSCK 837
+LL E W F+ K
Sbjct: 201 ELLEECKLRIPAWFGFTSK 219
>01_06_0875 -
32650150-32650350,32650464-32650788,32650872-32651092,
32651187-32651243,32651333-32651515
Length = 328
Score = 134 bits (325), Expect = 7e-32
Identities = 72/189 (38%), Positives = 116/189 (61%), Gaps = 6/189 (3%)
Frame = +1
Query: 250 EAPHIVVLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITN 429
EA V+DGG +T+L H + D LWSA + + P+ + HLD+L AGA++I +
Sbjct: 20 EAGGCAVVDGGLATELEAHGADL--HDELWSASCLVSAPHLIRKVHLDYLDAGANIITSA 77
Query: 430 TYQASVEGFVEHLGVTKEQGYELIARAVQLAKQARTLYLEEYRD--YVQNDDIP----LI 591
+YQA+++GF + G+++E+ L+ R+V +A++AR ++ E + Y + P L+
Sbjct: 78 SYQATIQGF-QARGLSRERSEALLRRSVHIAQEARAIFAEGWSKGPYANHRSSPRRPVLV 136
Query: 592 VGSVGPYGAHLHDGSEYDGSYADTTSIETMREWHRPRIQALVEAGVDLLALETIPCQEEX 771
S+G YGA+L DGSEY G Y + + ET++ +HR R+Q L +AG DL+A ETIP + E
Sbjct: 137 AASIGSYGAYLADGSEYTGDYGISVTKETLKSFHRRRLQVLADAGPDLIAFETIPNKLEA 196
Query: 772 ETLCDLLRE 798
+ D + E
Sbjct: 197 QASGDPITE 205
>04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153
Length = 1112
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 217 RTMTPPSSENTEAPHIVVLDGGFSTQLSCHVGHVID--GDPLWSARFIHTHPNEVVNTHL 390
+T+ + NT+ P +VV+ G QLS + ++D G LW+ + +++T
Sbjct: 71 KTLAWYAKTNTQVPELVVVPSGSRLQLSSNGLSLLDPGGHELWNPQVTSAAYANMLDTG- 129
Query: 391 DFLRAGAD 414
+F+ AGAD
Sbjct: 130 NFVLAGAD 137
>04_03_0717 -
18999057-18999175,18999267-18999303,18999453-18999668,
19000429-19000551,19000955-19001236,19002666-19002877,
19003481-19003661
Length = 389
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 700 RIQALVEAGVDLLALETIPCQEEXETLCDLLREFPGTKGWLXFSCKTIKVXP 855
R+QA +AG D+L ++ + EE + C + + P L KT + P
Sbjct: 189 RVQAFADAGADVLFIDALASIEEMKAFCAVSPKVPKMANMLEGGGKTPILSP 240
>12_01_1054 +
10847342-10847543,10847627-10847962,10848557-10848807,
10849226-10849313,10849548-10849723,10850597-10850656,
10850811-10850901,10851563-10851639,10852565-10852653,
10852950-10853061,10853623-10853725,10854892-10855121
Length = 604
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 535 TLYLEEYRDYVQNDDIPLIVGSVGPYGAHLHDGSEYDGSYADTTSIETMREWHR 696
T Y E + I LI GS Y +LHDG + +G S++T+ W+R
Sbjct: 392 TRYGEIEEKQISGGIISLIDGSY-EYYHYLHDGIDDNGWGCAYRSLQTIMSWYR 444
>11_06_0080 -
19880319-19880957,19881800-19881948,19882266-19883589,
19883766-19883953,19884034-19884499
Length = 921
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2
Query: 768 FLLTWNCL*CEEVYSR 721
FL TWNCL C VY+R
Sbjct: 668 FLATWNCLRCILVYAR 683
>03_02_0423 + 8321076-8322164
Length = 362
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 312 PDVARQLGREPTVQHNYVRSFCILAARWSHRSSFLSR 202
P A GR P V + + FC+ +A WS FL++
Sbjct: 93 PAAAAAAGRVPVVVYFHGGGFCVGSAAWSCYHEFLAK 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,386,720
Number of Sequences: 37544
Number of extensions: 501241
Number of successful extensions: 1271
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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