Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A24
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    29   0.70 
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    29   0.70 
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    28   2.1  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   6.5  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   8.6  

>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 124 LKIRIDLTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKT 270
           L+  +DL  +    L I  +G   K+  LET  +E+L K E L E + +
Sbjct: 564 LRNELDLVNKRNEDLLIELQGKEEKIQYLETENEEVLQKYENLQEELSS 612


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +1

Query: 151 EDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISSQ 282
           E ++ + ++ K  ++ +  L+  +D  LN++EIL ER+ T+  Q
Sbjct: 234 EAQLEMYMSGKSEDDLLFSLQQERDYALNQVEILQERVDTLMKQ 277


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 127 KIRIDLTEEDEICLKINEKGP-NNKMTELETRQDELLNKLEILYERIKTIS 276
           KIR   TEE +  +K+NE     +  T LE+ QD    +L  L ER++ +S
Sbjct: 120 KIRASATEETKDFIKLNEVNEFPSSDTSLESNQDG-FERLHPLAERLERMS 169


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 340 SVITPEEVVLVLSPDSLPWYLNIILK--KSNIPIHTTCHVHSSVPSEKLAKIKAFTQKLK 513
           +++  EE   ++SP  LP YL  + K    NI +      H  + +       +  QKL+
Sbjct: 296 TILLREETKSLISPKKLPGYLENLFKSDSDNIVVALLLMQH-KISNGNFRGALSIYQKLR 354

Query: 514 TSENPKVNLRLIF 552
           TS     +L +++
Sbjct: 355 TSLEASQSLSVLY 367


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 106 VNVCTTLKIRIDLTEEDEICLKINEKGPNNKMT 204
           ++ C T   RID   E+E+   + +K PN ++T
Sbjct: 339 IDRCVTSIFRIDSVIEEELRRMMGDKEPNEEIT 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,854
Number of Sequences: 5004
Number of extensions: 49239
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)