Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A24
         (923 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC013630-1|AAH13630.1|  320|Homo sapiens JTV1 gene protein.            40   0.010
U24169-1|AAC50391.1|  312|Homo sapiens JTV-1 protein.                  40   0.013
BC010156-1|AAH10156.1|  320|Homo sapiens JTV1 gene protein.            40   0.013
BC002853-1|AAH02853.1|  320|Homo sapiens JTV1 gene protein.            40   0.013
AC005995-2|AAS00389.1|  320|Homo sapiens unknown protein.              40   0.013

>BC013630-1|AAH13630.1|  320|Homo sapiens JTV1 gene protein.
          Length = 320

 Score = 40.3 bits (90), Expect = 0.010
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
 Frame = +1

Query: 355 EEVVLVLSPDSLPWYLNII--LKKSNIPIHTTCHVHSSVPS--EKLAKIKAFTQKLKTSE 522
           +++V+  +P S P  L ++  L   +  + +T H HSSV S  E L K      K +  +
Sbjct: 120 KDIVINANPGSPPLSLLVLHRLLCEHFRVLSTVHTHSSVKSVPENLLKCFGEQNKKQPRQ 179

Query: 523 NPKVNLRLIFKAAADSELKLSALS-TPILGNXNILRYL-SLAYXYHNSL 663
           + ++   LI+K    +++K S  +  PI G  NI R+L SL    HN++
Sbjct: 180 DYQLGFTLIWKNVPKTQMKFSIQTMCPIEGEGNIARFLFSLFGQKHNAV 228


>U24169-1|AAC50391.1|  312|Homo sapiens JTV-1 protein.
          Length = 312

 Score = 39.9 bits (89), Expect = 0.013
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
 Frame = +1

Query: 355 EEVVLVLSPDSLPWYLNII--LKKSNIPIHTTCHVHSSVPS--EKLAKIKAFTQKLKTSE 522
           +++V+  +P S P  L ++  L   +  + +T H HSSV S  E L K      K +  +
Sbjct: 120 KDIVINANPASPPLSLLVLHRLLCEHFRVLSTVHTHSSVKSVPENLLKCFGEQNKKQPRQ 179

Query: 523 NPKVNLRLIFKAAADSELKLSALS-TPILGNXNILRYL-SLAYXYHNSL 663
           + ++   LI+K    +++K S  +  PI G  NI R+L SL    HN++
Sbjct: 180 DYQLGFTLIWKNVPKTQMKFSIQTMCPIEGEGNIARFLFSLFGQKHNAV 228


>BC010156-1|AAH10156.1|  320|Homo sapiens JTV1 gene protein.
          Length = 320

 Score = 39.9 bits (89), Expect = 0.013
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
 Frame = +1

Query: 355 EEVVLVLSPDSLPWYLNII--LKKSNIPIHTTCHVHSSVPS--EKLAKIKAFTQKLKTSE 522
           +++V+  +P S P  L ++  L   +  + +T H HSSV S  E L K      K +  +
Sbjct: 120 KDIVINANPASPPLSLLVLHRLLCEHFRVLSTVHTHSSVKSVPENLLKCFGEQNKKQPRQ 179

Query: 523 NPKVNLRLIFKAAADSELKLSALS-TPILGNXNILRYL-SLAYXYHNSL 663
           + ++   LI+K    +++K S  +  PI G  NI R+L SL    HN++
Sbjct: 180 DYQLGFTLIWKNVPKTQMKFSIQTMCPIEGEGNIARFLFSLFGQKHNAV 228


>BC002853-1|AAH02853.1|  320|Homo sapiens JTV1 gene protein.
          Length = 320

 Score = 39.9 bits (89), Expect = 0.013
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
 Frame = +1

Query: 355 EEVVLVLSPDSLPWYLNII--LKKSNIPIHTTCHVHSSVPS--EKLAKIKAFTQKLKTSE 522
           +++V+  +P S P  L ++  L   +  + +T H HSSV S  E L K      K +  +
Sbjct: 120 KDIVINANPASPPLSLLVLHRLLCEHFRVLSTVHTHSSVKSVPENLLKCFGEQNKKQPRQ 179

Query: 523 NPKVNLRLIFKAAADSELKLSALS-TPILGNXNILRYL-SLAYXYHNSL 663
           + ++   LI+K    +++K S  +  PI G  NI R+L SL    HN++
Sbjct: 180 DYQLGFTLIWKNVPKTQMKFSIQTMCPIEGEGNIARFLFSLFGQKHNAV 228


>AC005995-2|AAS00389.1|  320|Homo sapiens unknown protein.
          Length = 320

 Score = 39.9 bits (89), Expect = 0.013
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
 Frame = +1

Query: 355 EEVVLVLSPDSLPWYLNII--LKKSNIPIHTTCHVHSSVPS--EKLAKIKAFTQKLKTSE 522
           +++V+  +P S P  L ++  L   +  + +T H HSSV S  E L K      K +  +
Sbjct: 120 KDIVINANPASPPLSLLVLHRLLCEHFRVLSTVHTHSSVKSVPENLLKCFGEQNKKQPRQ 179

Query: 523 NPKVNLRLIFKAAADSELKLSALS-TPILGNXNILRYL-SLAYXYHNSL 663
           + ++   LI+K    +++K S  +  PI G  NI R+L SL    HN++
Sbjct: 180 DYQLGFTLIWKNVPKTQMKFSIQTMCPIEGEGNIARFLFSLFGQKHNAV 228


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,417,540
Number of Sequences: 237096
Number of extensions: 1722102
Number of successful extensions: 2753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2753
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12047931574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)