Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A24
         (923 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT012670-1|AAT08476.1|  322|Drosophila melanogaster LP12114p pro...    31   2.9  
AY069537-1|AAL39682.3|  301|Drosophila melanogaster LD25772p pro...    31   2.9  
AE014296-2541|AAS64998.1|  301|Drosophila melanogaster CG12304-P...    31   2.9  
AE014296-2540|AAF49612.1|  334|Drosophila melanogaster CG12304-P...    31   2.9  

>BT012670-1|AAT08476.1|  322|Drosophila melanogaster LP12114p
           protein.
          Length = 322

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
 Frame = +1

Query: 217 RQDELLNKLEILYERIKTISSQCKLDNMXXXXXXXXXXKVESVITPEEVVLVLSPDSLPW 396
           RQ+++L +LE L  ++  I +   +                  +  ++VV+   P+ +P+
Sbjct: 79  RQEKVLKQLEELKAQLGQIRAGLGVCGKTFQHTTAFQNGGLKEVPLQDVVINGHPNFIPY 138

Query: 397 YLNIILKKS-----NIPIHTTCHVHSSVPSEKLAKIKAFTQKLKTSEN-PKVNLRLIFKA 558
            L + LK +      I + T  H   +       + +A   K+  +   PK+++ LI+K 
Sbjct: 139 AL-LALKNAWRNLYTIDVKTFTHSTMADIGPAAREFEANLAKVPVNPALPKISVTLIWKN 197

Query: 559 AADSELKLS-ALSTPILGNXNILRYL 633
              +E+  S  +  PI G  NI+RYL
Sbjct: 198 CEHTEMISSPTMYVPIYGEVNIIRYL 223


>AY069537-1|AAL39682.3|  301|Drosophila melanogaster LD25772p
           protein.
          Length = 301

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
 Frame = +1

Query: 217 RQDELLNKLEILYERIKTISSQCKLDNMXXXXXXXXXXKVESVITPEEVVLVLSPDSLPW 396
           RQ+++L +LE L  ++  I +   +                  +  ++VV+   P+ +P+
Sbjct: 58  RQEKVLKQLEELKAQLGQIRAGLGVCGKTFQHTTAFQNGGLKEVPLQDVVINGHPNFIPY 117

Query: 397 YLNIILKKS-----NIPIHTTCHVHSSVPSEKLAKIKAFTQKLKTSEN-PKVNLRLIFKA 558
            L + LK +      I + T  H   +       + +A   K+  +   PK+++ LI+K 
Sbjct: 118 AL-LALKNAWRNLYTIDVKTFTHSTMADIGPAAREFEANLAKVPVNPALPKISVTLIWKN 176

Query: 559 AADSELKLS-ALSTPILGNXNILRYL 633
              +E+  S  +  PI G  NI+RYL
Sbjct: 177 CEHTEMISSPTMYVPIYGEVNIIRYL 202


>AE014296-2541|AAS64998.1|  301|Drosophila melanogaster CG12304-PB,
           isoform B protein.
          Length = 301

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
 Frame = +1

Query: 217 RQDELLNKLEILYERIKTISSQCKLDNMXXXXXXXXXXKVESVITPEEVVLVLSPDSLPW 396
           RQ+++L +LE L  ++  I +   +                  +  ++VV+   P+ +P+
Sbjct: 58  RQEKVLKQLEELKAQLGQIRAGLGVCGKTFQHTTAFQNGGLKEVPLQDVVINGHPNFIPY 117

Query: 397 YLNIILKKS-----NIPIHTTCHVHSSVPSEKLAKIKAFTQKLKTSEN-PKVNLRLIFKA 558
            L + LK +      I + T  H   +       + +A   K+  +   PK+++ LI+K 
Sbjct: 118 AL-LALKNAWRNLYTIDVKTFTHSTMADIGPAAREFEANLAKVPVNPALPKISVTLIWKN 176

Query: 559 AADSELKLS-ALSTPILGNXNILRYL 633
              +E+  S  +  PI G  NI+RYL
Sbjct: 177 CEHTEMISSPTMYVPIYGEVNIIRYL 202


>AE014296-2540|AAF49612.1|  334|Drosophila melanogaster CG12304-PA,
           isoform A protein.
          Length = 334

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
 Frame = +1

Query: 217 RQDELLNKLEILYERIKTISSQCKLDNMXXXXXXXXXXKVESVITPEEVVLVLSPDSLPW 396
           RQ+++L +LE L  ++  I +   +                  +  ++VV+   P+ +P+
Sbjct: 91  RQEKVLKQLEELKAQLGQIRAGLGVCGKTFQHTTAFQNGGLKEVPLQDVVINGHPNFIPY 150

Query: 397 YLNIILKKS-----NIPIHTTCHVHSSVPSEKLAKIKAFTQKLKTSEN-PKVNLRLIFKA 558
            L + LK +      I + T  H   +       + +A   K+  +   PK+++ LI+K 
Sbjct: 151 AL-LALKNAWRNLYTIDVKTFTHSTMADIGPAAREFEANLAKVPVNPALPKISVTLIWKN 209

Query: 559 AADSELKLS-ALSTPILGNXNILRYL 633
              +E+  S  +  PI G  NI+RYL
Sbjct: 210 CEHTEMISSPTMYVPIYGEVNIIRYL 235


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,856,468
Number of Sequences: 53049
Number of extensions: 510098
Number of successful extensions: 981
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4546383066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)