Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A21
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    41   2e-04
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    31   0.22 
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    29   1.2  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    28   1.6  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    28   2.1  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   3.6  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    27   4.8  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   6.3  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   8.4  

>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 20/46 (43%), Positives = 28/46 (60%)
 Frame = +2

Query: 515 LYILYFIAKITELLDTVFFVLRKKQNQVTFLXLYHHTLMPLLSWVR 652
           LY L ++ K  EL+DTVF  L+KK   + FL  YHH +  LL + +
Sbjct: 136 LYYLNYLTKYLELMDTVFLFLKKK--PLAFLHCYHHGITALLCFTQ 179



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +3

Query: 696 VNSFIHVIMYGYYLVTGLGPQYXKYLWWKKHLTSMQLI 809
           +N ++HVIMY YY +   G    + +WWK+ +T +Q+I
Sbjct: 193 LNLYVHVIMYSYYFLAACG----RRVWWKQWVTRVQII 226


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 454 YSLFCRRKLNPYKLSKRSKQSAQCCKQLKHFSVCMVSCLSCT 329
           Y+L C+R+ N +KL KR  Q  +       F VC++  LS T
Sbjct: 480 YNLHCKRE-NYFKLKKRDPQQFRSASGRLGFMVCLLEILSFT 520


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 696 VNSFIHVIMYGYYLVTGLGPQYXKYLWWKKHLTSMQLI 809
           +N  +HV MY YY +   G +      WKK +T  Q++
Sbjct: 173 INLLVHVTMYYYYYLVAKGIRVP----WKKWVTRFQIV 206


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 483 KRSGEFEV-GIH-CISCTS*RRSLNSWTPCSSCFEKSKIKS 599
           K+SG+     IH C++C   +   +   PCS+C ++S I+S
Sbjct: 10  KKSGQTSRRAIHSCLACRRKKLKCDHGRPCSNCLKRSTIQS 50


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 333 VLRSLVAAEIQIRSQHSEYRPRALHQPP 250
           V  S++AA  QI  Q+SE  PR  ++PP
Sbjct: 174 VAPSMLAASHQIVPQYSENNPRVSNEPP 201


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 382 CKQLKHFSVCMVSCLSCTEV 323
           CK LKH SV  ++ + CTE+
Sbjct: 406 CKTLKHLSVTGINSILCTEL 425


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 109 QMNLTFVKGNLFDDLSAGRSYTXXKGSL 26
           ++NL F+K  ++++L+  R YT  KG +
Sbjct: 272 KLNLDFLKERIWEELNLYRIYTKRKGEM 299


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 381  QHCADCFERLLNLYGFSLRLQNKL*IYLSRYKLF 482
            ++C + FERL NL     R  N L +Y    KL+
Sbjct: 1520 RYCMEIFERLYNLQSEDGRFVNGLFLYPPNRKLY 1553


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
 Frame = +3

Query: 516 CISCTS*RRSL---NSWTP--CSSCFEK 584
           C++C   +RSL   N  TP  CSSCFE+
Sbjct: 544 CLACAMIQRSLERKNMSTPSQCSSCFEQ 571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,432,339
Number of Sequences: 5004
Number of extensions: 70922
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)