Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A21
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   3.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   5.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.7  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 27  REP--LXXVYDRPAERSSN-KFPFTNVKFI*NLKFAKRLYYKNII 152
           REP  +  + ++    ++N K+ + N     N  + K+LYYKN I
Sbjct: 77  REPKIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYI 121


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 241 VKDWWLMKSPWPVLTVL 291
           + DW+ + S WP L  L
Sbjct: 430 LNDWYSLASSWPALVPL 446


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -1

Query: 588 CFFRSTKNTVSKSSVIFAMKYKIYNGCPPQILRIV*IIYILTGKSIACFV 439
           CF R+T   + K S      Y I++      L ++ ++Y+  G+ I+C +
Sbjct: 178 CFPRATNRDIKKCSYNMDSSYVIFSAMGSFFLPMLVMLYVY-GR-ISCVI 225


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 352 MVSCLSCTEVPCSCRNTNTLPAQ 284
           +V+C +C   PC+   TN   A+
Sbjct: 424 IVTCTNCGPNPCTHTTTNGCTAE 446


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 352 MVSCLSCTEVPCSCRNTNTLPAQ 284
           +V+C +C   PC+   TN   A+
Sbjct: 410 IVTCTNCGPNPCTHTTTNGCTAE 432


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 352 MVSCLSCTEVPCSCRNTNTLPAQ 284
           +V+C +C   PC+   TN   A+
Sbjct: 444 IVTCTNCGPNPCTHTTTNGCTAE 466


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 352 MVSCLSCTEVPCSCRNTNTLPAQ 284
           +V+C +C   PC+   TN   A+
Sbjct: 393 IVTCTNCGPNPCTHTTTNGCTAE 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,205
Number of Sequences: 438
Number of extensions: 4681
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)