Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_A18
(954 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 36 0.056
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.53
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.53
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.6
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 30 2.8
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 30 2.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.7
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z81458-5|CAB03825.2| 252|Caenorhabditis elegans Hypothetical pr... 28 8.6
U52002-6|AAB37732.1| 142|Caenorhabditis elegans Hypothetical pr... 28 8.6
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 28 8.6
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 8.6
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 35.5 bits (78), Expect = 0.056
Identities = 31/103 (30%), Positives = 35/103 (33%), Gaps = 7/103 (6%)
Frame = +1
Query: 451 PRXXALXARAPXXFPRHQXPXPXVIGYPXXLXXPPGGGMWASR--PXRG----XPPXXXX 612
PR L P F + P P + GYP PPG G + P G PP
Sbjct: 689 PRPAGLPPGVPPMFNLNAPPPPGIPGYP-PAPPPPGVGPPPPQGIPPMGFDPNKPPPPMF 747
Query: 613 XPGXXXXALXPPXXPWGGLXPKVPXPP-ARLXXYPSPGVXRGG 738
G A PP G P PP + P P RGG
Sbjct: 748 QQGFNAGAPPPPFGRGAGPMSSFPPPPRGGMHHMPPPPSFRGG 790
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.53
Identities = 21/65 (32%), Positives = 25/65 (38%)
Frame = +1
Query: 550 PPGGGMWASRPXRGXPPXXXXXPGXXXXALXPPXXPWGGLXPKVPXPPARLXXYPSPGVX 729
PP GM S PP P + PP P G+ P+ P PP+ P P
Sbjct: 246 PPLMGMAQSGYQGQYPPVPPPPPSVTP--MPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP 303
Query: 730 RGGTP 744
G TP
Sbjct: 304 PGRTP 308
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/73 (30%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Frame = +1
Query: 508 PXPXVIGYPXXLXXPPGGGMWASRPXRGXPPXXXXXPGXXXXALXPPXXPWGGLXPK--- 678
P P G PP GMW P PP PG PP P P
Sbjct: 276 PMPPTPGMTPRPPPPPSSGMWPPPP----PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMG 331
Query: 679 -VPXPPARLXXYP 714
+P PP YP
Sbjct: 332 GMPPPPPPGMRYP 344
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.53
Identities = 21/65 (32%), Positives = 25/65 (38%)
Frame = +1
Query: 550 PPGGGMWASRPXRGXPPXXXXXPGXXXXALXPPXXPWGGLXPKVPXPPARLXXYPSPGVX 729
PP GM S PP P + PP P G+ P+ P PP+ P P
Sbjct: 256 PPLMGMAQSGYQGQYPPVPPPPPSVTP--MPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP 313
Query: 730 RGGTP 744
G TP
Sbjct: 314 PGRTP 318
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/73 (30%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Frame = +1
Query: 508 PXPXVIGYPXXLXXPPGGGMWASRPXRGXPPXXXXXPGXXXXALXPPXXPWGGLXPK--- 678
P P G PP GMW P PP PG PP P P
Sbjct: 286 PMPPTPGMTPRPPPPPSSGMWPPPP----PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMG 341
Query: 679 -VPXPPARLXXYP 714
+P PP YP
Sbjct: 342 GMPPPPPPGMRYP 354
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.6
Identities = 25/89 (28%), Positives = 27/89 (30%)
Frame = +1
Query: 514 PXVIGYPXXLXXPPGGGMWASRPXRGXPPXXXXXPGXXXXALXPPXXPWGGLXPKVPXPP 693
P + G P PP GG+ PP P PP P G P P PP
Sbjct: 720 PPITGGPPP--PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Query: 694 ARLXXYPSPGVXRGGTPLGAXXCSXXLPP 780
P P G A LPP
Sbjct: 778 GGFKGGPPPPPPPGMFAPMAPVIPDYLPP 806
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.6
Identities = 25/89 (28%), Positives = 27/89 (30%)
Frame = +1
Query: 514 PXVIGYPXXLXXPPGGGMWASRPXRGXPPXXXXXPGXXXXALXPPXXPWGGLXPKVPXPP 693
P + G P PP GG+ PP P PP P G P P PP
Sbjct: 720 PPITGGPPP--PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Query: 694 ARLXXYPSPGVXRGGTPLGAXXCSXXLPP 780
P P G A LPP
Sbjct: 778 GGFKGGPPPPPPPGMFAPMAPVIPDYLPP 806
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.6
Identities = 25/89 (28%), Positives = 27/89 (30%)
Frame = +1
Query: 514 PXVIGYPXXLXXPPGGGMWASRPXRGXPPXXXXXPGXXXXALXPPXXPWGGLXPKVPXPP 693
P + G P PP GG+ PP P PP P G P P PP
Sbjct: 303 PPITGGPPP--PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360
Query: 694 ARLXXYPSPGVXRGGTPLGAXXCSXXLPP 780
P P G A LPP
Sbjct: 361 GGFKGGPPPPPPPGMFAPMAPVIPDYLPP 389
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/57 (31%), Positives = 21/57 (36%)
Frame = +1
Query: 550 PPGGGMWASRPXRGXPPXXXXXPGXXXXALXPPXXPWGGLXPKVPXPPARLXXYPSP 720
PPGGG P +G P P P GG P+ PP + YP P
Sbjct: 673 PPGGGQGPPPPPQGQQYYGGPPPPGQ------PYGPPGGYPPQQQRPPYQAQPYPGP 723
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/57 (31%), Positives = 21/57 (36%)
Frame = +1
Query: 550 PPGGGMWASRPXRGXPPXXXXXPGXXXXALXPPXXPWGGLXPKVPXPPARLXXYPSP 720
PPGGG P +G P P P GG P+ PP + YP P
Sbjct: 673 PPGGGQGPPPPPQGQQYYGGPPPPGQ------PYGPPGGYPPQQQRPPYQAQPYPGP 723
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/84 (28%), Positives = 25/84 (29%)
Frame = +1
Query: 550 PPGGGMWASRPXRGXPPXXXXXPGXXXXALXPPXXPWGGLXPKVPXPPARLXXYPSPGVX 729
PP G P G PP A P P G P P P P
Sbjct: 258 PPAAGS-PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQ 316
Query: 730 RGGTPLGAXXCSXXLPPLQXXXXP 801
GG+P A S PP Q P
Sbjct: 317 AGGSPPPAGTGSPPPPPRQKRQAP 340
Score = 28.3 bits (60), Expect = 8.6
Identities = 29/112 (25%), Positives = 32/112 (28%), Gaps = 12/112 (10%)
Frame = +1
Query: 526 GYPXXLXXPPGGGMWASRPXRGXPPXXXXXPGXXXXALXPPXXPWGGLXPKVP------- 684
G+ PP G P +G PP A P P G P P
Sbjct: 224 GFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 283
Query: 685 -----XPPARLXXYPSPGVXRGGTPLGAXXCSXXLPPLQXXXXPRXLXVSRP 825
PP R P P RG P G+ LPP Q P P
Sbjct: 284 PAGGSPPPPRAGSPPPPPPPRGSPPTGS------LPPPQAGGSPPPAGTGSP 329
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/84 (28%), Positives = 25/84 (29%)
Frame = +1
Query: 550 PPGGGMWASRPXRGXPPXXXXXPGXXXXALXPPXXPWGGLXPKVPXPPARLXXYPSPGVX 729
PP G P G PP A P P G P P P P
Sbjct: 279 PPAAGS-PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQ 337
Query: 730 RGGTPLGAXXCSXXLPPLQXXXXP 801
GG+P A S PP Q P
Sbjct: 338 AGGSPPPAGTGSPPPPPRQKRQAP 361
Score = 28.3 bits (60), Expect = 8.6
Identities = 29/112 (25%), Positives = 32/112 (28%), Gaps = 12/112 (10%)
Frame = +1
Query: 526 GYPXXLXXPPGGGMWASRPXRGXPPXXXXXPGXXXXALXPPXXPWGGLXPKVP------- 684
G+ PP G P +G PP A P P G P P
Sbjct: 245 GFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 304
Query: 685 -----XPPARLXXYPSPGVXRGGTPLGAXXCSXXLPPLQXXXXPRXLXVSRP 825
PP R P P RG P G+ LPP Q P P
Sbjct: 305 PAGGSPPPPRAGSPPPPPPPRGSPPTGS------LPPPQAGGSPPPAGTGSP 350
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/84 (28%), Positives = 25/84 (29%)
Frame = +1
Query: 550 PPGGGMWASRPXRGXPPXXXXXPGXXXXALXPPXXPWGGLXPKVPXPPARLXXYPSPGVX 729
PP G P G PP A P P G P P P P
Sbjct: 264 PPAAGS-PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQ 322
Query: 730 RGGTPLGAXXCSXXLPPLQXXXXP 801
GG+P A S PP Q P
Sbjct: 323 AGGSPPPAGTGSPPPPPRQKRQAP 346
Score = 28.3 bits (60), Expect = 8.6
Identities = 29/112 (25%), Positives = 32/112 (28%), Gaps = 12/112 (10%)
Frame = +1
Query: 526 GYPXXLXXPPGGGMWASRPXRGXPPXXXXXPGXXXXALXPPXXPWGGLXPKVP------- 684
G+ PP G P +G PP A P P G P P
Sbjct: 230 GFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 289
Query: 685 -----XPPARLXXYPSPGVXRGGTPLGAXXCSXXLPPLQXXXXPRXLXVSRP 825
PP R P P RG P G+ LPP Q P P
Sbjct: 290 PAGGSPPPPRAGSPPPPPPPRGSPPTGS------LPPPQAGGSPPPAGTGSP 335
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 29.1 bits (62), Expect = 4.9
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Frame = +1
Query: 550 PPGGGMWASRPXRGXP----PXXXXXPGXXXXALXPPXXPWG---GLXPKVPXPPARLXX 708
PP G A P RG P P P A PP P G P +P PP R
Sbjct: 151 PPRGMPGAYPPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPPMPGPPQRSRF 210
Query: 709 YPSPGVXRGGTPL 747
G R G P+
Sbjct: 211 DQPDGGDRWGPPM 223
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 29.1 bits (62), Expect = 4.9
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Frame = +1
Query: 550 PPGGGMWASRPXRGXP----PXXXXXPGXXXXALXPPXXPWG---GLXPKVPXPPARLXX 708
PP G A P RG P P P A PP P G P +P PP R
Sbjct: 151 PPRGMPGAYPPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPPMPGPPQRSRF 210
Query: 709 YPSPGVXRGGTPL 747
G R G P+
Sbjct: 211 DQPDGGDRWGPPM 223
>Z81458-5|CAB03825.2| 252|Caenorhabditis elegans Hypothetical
protein C03E10.6 protein.
Length = 252
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 673 PKVPXPPARLXXYPSPGVXRGGTPLGAXXCSXXLPP 780
P P PP R Y PG P G+ C+ PP
Sbjct: 45 PGKPGPPGRAGNYGQPGSQGPIGPPGSSSCNYECPP 80
>U52002-6|AAB37732.1| 142|Caenorhabditis elegans Hypothetical
protein F08B4.7 protein.
Length = 142
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +1
Query: 508 PXPXVIGYPXXLXXPPGGGMWASRPXRGXPPXXXXXPGXXXXALXPPXXPW-GGLXPKVP 684
P P V G+ + PPG M A RP G PG P G+ P +P
Sbjct: 75 PVPPV-GHHPMMGGPPGMPMMAPRPFPGPGVGFPGAPGMPPFPGGPMGMAGPPGMPPMMP 133
Query: 685 XPP 693
PP
Sbjct: 134 RPP 136
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/77 (27%), Positives = 25/77 (32%)
Frame = -2
Query: 599 GGXPRXGRXAHMPPPGGXXRXCG*PITXGXGX*XRGKXXGARAXXAXXRGXGXAPNXXKA 420
GG P G+ P G G P G G RG G G + +
Sbjct: 131 GGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQG 190
Query: 419 SPRAPGXGXXKGXPPAR 369
P PG G G PP +
Sbjct: 191 GP--PGHGGMGGPPPGQ 205
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/77 (27%), Positives = 25/77 (32%)
Frame = -2
Query: 599 GGXPRXGRXAHMPPPGGXXRXCG*PITXGXGX*XRGKXXGARAXXAXXRGXGXAPNXXKA 420
GG P G+ P G G P G G RG G G + +
Sbjct: 411 GGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQG 470
Query: 419 SPRAPGXGXXKGXPPAR 369
P PG G G PP +
Sbjct: 471 GP--PGHGGMGGPPPGQ 485
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,497,844
Number of Sequences: 27780
Number of extensions: 194144
Number of successful extensions: 593
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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