Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A17
         (934 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.31 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.0  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    26   6.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +2

Query: 782 PPPPGGGXXXGXPPPRKXXXPLVXXGGGXFPPP 880
           PPPP  G     PPP     P V  GG  +  P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 29.9 bits (64), Expect = 0.54
 Identities = 16/51 (31%), Positives = 17/51 (33%)
 Frame = +3

Query: 525 PPXGXXXKXPPPXKXXXPPXXKKKXXGGXPPPXXXXPXXXGGGXXFXXPPP 677
           PP       PPP     PP        G PPP    P    GG  +  P P
Sbjct: 752 PPPAPIMGGPPP-----PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/59 (30%), Positives = 18/59 (30%)
 Frame = +1

Query: 523 PPPXGXXKKXPPPXKXXXPXXXKKKXXGGXPPPXXXXPXXGGGGKXFXXPPLXXPXFGG 699
           PPP       P P     P        GG PPP    P   G G     PP      GG
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGG-PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 821 GXNPXXXPPPGGGXPXXXXPPXPXG 747
           G  P   PPPG   P    PP P G
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 396 KPXPQKKKXXGXKKKKNXGXPXXF 467
           KP   KKK    KKKKN G    F
Sbjct: 33  KPPASKKKRKNRKKKKNNGPSEQF 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.151    0.527 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,953
Number of Sequences: 5004
Number of extensions: 31628
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)