Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A15
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    30   0.39 
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    29   0.68 
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   4.8  
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc...    26   6.3  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   6.3  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   8.4  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   8.4  

>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 218 EMLLHPELLSNEQLTHIIEQRHLRI--DGIEKM-LRDDLLDLFHQYCVPYGQ 364
           E  L P + S   L  IIE  H++   D I+ + ++D+L+D FH  CV   Q
Sbjct: 71  EAALRPAVGSVHDLVRIIETDHVQAARDFIQDVGIQDELIDAFHADCVELEQ 122


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 527 KLENVTTKCSHMNSNNHKRKIINDPNSEPYSS 622
           K ++    C H NSN+H+ KI+ D  S   SS
Sbjct: 109 KADSTNGFCEHNNSNDHQLKILQDKGSGSPSS 140


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/36 (25%), Positives = 23/36 (63%)
 Frame = +3

Query: 114 ILCVGAIKLQIISVSMLHVIKSSSLTSEKQWLFLTK 221
           +  + +  LQII ++ L ++KS +L  ++ + F+++
Sbjct: 251 VFAISSSSLQIIDINTLSLVKSINLKDDESFSFISR 286


>SPAC23H4.11c |cnl2||centromere localized protein
           Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 218 EMLLHPELLSNEQLTHIIEQRHLRIDGIEKMLRDDLLDLFHQYCVPYGQRK 370
           E +L+  LLS  +L  II     R    ++   D L++  ++YC    Q++
Sbjct: 5   EQILNDYLLSQGRLQSIISLEQWRQLFPQRYREDPLIERLYEYCTQQRQKR 55


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +2

Query: 359 GQRKYRDSGRGKILNRTRHISP--EPSRSLNKIK--ETRHT 469
           G   +++ G GK+  R  H+SP  E ++SL   +  E++HT
Sbjct: 88  GSYGFKEFGLGKLFIRAMHLSPTSEDAKSLKNWRGSESKHT 128


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 254 QLTHIIEQRHLRIDGIEKMLRDDLLDLFHQYCVP 355
           +L  I E+  L   GI K+L+DDLL +F+ +  P
Sbjct: 254 RLLKITEREFLLYTGILKILKDDLL-VFYTFIPP 286


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +2

Query: 398  LNRTRHISPEPSRSLNKIKETRHTTVERIKPPPDLLSGHMKRIKLENVTTKCSHMNSNNH 577
            LN+    S  P   +   KE   T    +    DLLS  ++RIK   +    +  +SNNH
Sbjct: 1869 LNKKFDSSARPFDEIEMEKEVL-TLKSNLAQKDDLLSSLVERIKQIEMFALKTQKDSNNH 1927

Query: 578  KRK 586
            + +
Sbjct: 1928 REE 1930


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,359
Number of Sequences: 5004
Number of extensions: 58766
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)