Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A13
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    25   0.95 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   1.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.7  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 680 KKAELKMNIIAQWRYFSY 733
           +  E  +N+I +W+YF Y
Sbjct: 26  RNLEKSLNVIHEWKYFDY 43


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 680 KKAELKMNIIAQWRYFSY 733
           K  E  MN+I +W+Y  Y
Sbjct: 29  KNLEHSMNVIHEWKYIDY 46


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 680 KKAELKMNIIAQWRYFSY 733
           +K    MN+I +W+Y  Y
Sbjct: 29  RKLANSMNVIHEWKYLDY 46


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -2

Query: 436 YCSCPQELNFYFHCFC 389
           + SC      +FHC+C
Sbjct: 416 WLSCSSFFQQFFHCYC 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,715
Number of Sequences: 438
Number of extensions: 4507
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)