Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_A11
(915 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110482-2|CAB60335.1| 316|Caenorhabditis elegans Hypothetical ... 113 2e-25
AL110482-1|CAB54385.1| 316|Caenorhabditis elegans Hypothetical ... 113 2e-25
U80844-1|AAB37976.1| 317|Caenorhabditis elegans Hypothetical pr... 102 4e-22
U55368-5|AAA97992.2| 333|Caenorhabditis elegans Hypothetical pr... 81 1e-15
AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical ... 80 2e-15
Z75553-1|CAA99947.2| 320|Caenorhabditis elegans Hypothetical pr... 73 3e-13
U21324-6|AAA62562.1| 287|Caenorhabditis elegans Hypothetical pr... 69 4e-12
Z71181-2|CAA94895.1| 301|Caenorhabditis elegans Hypothetical pr... 67 1e-11
Z81088-3|CAB03128.1| 283|Caenorhabditis elegans Hypothetical pr... 64 1e-10
U80844-2|AAB37972.1| 134|Caenorhabditis elegans Hypothetical pr... 61 1e-09
Z81088-2|CAB03127.1| 297|Caenorhabditis elegans Hypothetical pr... 60 3e-09
U21308-3|AAB93322.2| 321|Caenorhabditis elegans Hypothetical pr... 57 2e-08
U50068-4|AAB37733.1| 287|Caenorhabditis elegans Hypothetical pr... 56 3e-08
U39654-1|AAA80407.2| 131|Caenorhabditis elegans Hypothetical pr... 32 0.66
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.1
U00033-13|AAC48300.1| 439|Caenorhabditis elegans Mechanosensory... 31 1.1
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 30 2.7
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 30 2.7
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 30 2.7
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 30 2.7
Z74039-5|CAA98504.1| 479|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z72517-3|CAA96695.1| 717|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 29 3.5
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 29 3.5
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 29 3.5
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 29 4.6
>AL110482-2|CAB60335.1| 316|Caenorhabditis elegans Hypothetical
protein Y39G8B.1b protein.
Length = 316
Score = 113 bits (271), Expect = 2e-25
Identities = 55/139 (39%), Positives = 82/139 (58%), Gaps = 1/139 (0%)
Frame = +1
Query: 361 VATLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKN 540
V +LKL G +P I LGT P ++TA+ GYR ID A++Y N+K +G+A+K
Sbjct: 2 VQSLKLNSGYSIPAIGLGTWQSKPGEVAAAIKTAVAAGYRHIDCAHVYQNQKEVGEALKE 61
Query: 541 KIDDGTVRRDELFIMGKLWSTFHRTGSGGDGLQDSLADLGLEFFDLFLIHNPMSLKEGNS 720
+D+G V+R+ELFI K+W+TFH + + L+DL L + DL LIH P EG
Sbjct: 62 ILDEGKVKREELFITSKVWNTFHSEAKAHENIDIILSDLQLSYVDLMLIHWPQGYAEGAE 121
Query: 721 SIPK-ISSVIQYSEFDYMD 774
P + ++YS+ DY++
Sbjct: 122 LFPAGENGKMRYSDVDYLE 140
Score = 36.3 bits (80), Expect = 0.031
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 779 WFGMEDLVXKGLXXNIGVSNFNLTXILKIWTKGKVKPAVNQVE 907
W E G +IG+SNF + I ++W +VKPA QVE
Sbjct: 142 WKAFEAAQKAGKCRSIGLSNFTHSQIQRVWDAAEVKPACLQVE 184
>AL110482-1|CAB54385.1| 316|Caenorhabditis elegans Hypothetical
protein Y39G8B.1a protein.
Length = 316
Score = 113 bits (271), Expect = 2e-25
Identities = 55/139 (39%), Positives = 82/139 (58%), Gaps = 1/139 (0%)
Frame = +1
Query: 361 VATLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKN 540
V +LKL G +P I LGT P ++TA+ GYR ID A++Y N+K +G+A+K
Sbjct: 2 VQSLKLNSGYSIPAIGLGTWQSKPGEVAAAIKTAVAAGYRHIDCAHVYQNQKEVGEALKE 61
Query: 541 KIDDGTVRRDELFIMGKLWSTFHRTGSGGDGLQDSLADLGLEFFDLFLIHNPMSLKEGNS 720
+D+G V+R+ELFI K+W+TFH + + L+DL L + DL LIH P EG
Sbjct: 62 ILDEGKVKREELFITSKVWNTFHSEAKAHENIDIILSDLQLSYVDLMLIHWPQGYAEGAE 121
Query: 721 SIPK-ISSVIQYSEFDYMD 774
P + ++YS+ DY++
Sbjct: 122 LFPAGENGKMRYSDVDYLE 140
Score = 36.3 bits (80), Expect = 0.031
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 779 WFGMEDLVXKGLXXNIGVSNFNLTXILKIWTKGKVKPAVNQVE 907
W E G +IG+SNF + I ++W +VKPA QVE
Sbjct: 142 WKAFEAAQKAGKCRSIGLSNFTHSQIQRVWDAAEVKPACLQVE 184
>U80844-1|AAB37976.1| 317|Caenorhabditis elegans Hypothetical
protein C07D8.6 protein.
Length = 317
Score = 102 bits (244), Expect = 4e-22
Identities = 53/119 (44%), Positives = 72/119 (60%)
Frame = +1
Query: 364 ATLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNK 543
A++KL +G MPVI LGT P V+TA+ GYR IDTA +Y NE+ IG AIK
Sbjct: 6 ASIKLSNGVEMPVIGLGTWQSSPAEVITAVKTAVKAGYRLIDTASVYQNEEAIGTAIKEL 65
Query: 544 IDDGTVRRDELFIMGKLWSTFHRTGSGGDGLQDSLADLGLEFFDLFLIHNPMSLKEGNS 720
+++G V+R+ELFI K W+ G GL++SL L LE+ DL+L H P + + S
Sbjct: 66 LEEGVVKREELFITTKAWTHELAPGKLEGGLRESLKKLQLEYVDLYLAHMPAAFNDDMS 124
>U55368-5|AAA97992.2| 333|Caenorhabditis elegans Hypothetical
protein T08H10.1 protein.
Length = 333
Score = 80.6 bits (190), Expect = 1e-15
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Frame = +1
Query: 361 VATLKLRDGTFMPVIALGTALLPPRLT-TEIVETAIDMGYRAIDTAYIYGNEKLIGKAIK 537
V ++ L G +P+ LGT + T + A+D GYR IDTA++Y NE +IGK +
Sbjct: 3 VDSIPLNTGAQLPLFGLGTWQVKDEAELTVALRAALDAGYRLIDTAHLYQNEHIIGKVLH 62
Query: 538 NKIDDGTVRRDELFIMGKLWSTFHRTGSGGDGLQDSLADLGLEFFDLFLIHNPMSLKEGN 717
I G ++R+++F+ KL T H ++ L L LE+ DL+LIH P K
Sbjct: 63 EYISSGKLKREDIFVTSKLPFTAHAPEDVPKCVESQLKALQLEYIDLYLIHCPFPFKHQE 122
Query: 718 SS 723
S
Sbjct: 123 GS 124
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 779 WFGMEDLVXKGLXXNIGVSNFNLTXILKIWTKGKVKPAVNQVEC 910
W +E L +G +GVSNF+ + ++ +VKPA QVEC
Sbjct: 145 WRALEKLYKEGKLKALGVSNFSCNQLQALYDAAEVKPANQQVEC 188
>AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical
protein Y39G8B.2 protein.
Length = 339
Score = 80.2 bits (189), Expect = 2e-15
Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Frame = +1
Query: 367 TLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKI 546
T+ L G MPVI GT LP L E V A++ GYR ID+A + N++ + IK+
Sbjct: 6 TVTLNSGYEMPVIGYGTWQLPKNLAAERVRDALEAGYRHIDSALSFKNQEEVAAGIKDWC 65
Query: 547 DDGTVRRDELFIMGKLWSTFHRTGSGGDGLQDSLADLGLEFFDLFLIHNPMSLKE----G 714
VRR+ELF+ K+W+T+H + + L + DL +IH P E G
Sbjct: 66 KIRKVRREELFLSSKIWNTYHSRNRCMQQIDEMLEIFETTYMDLIVIHWPFGWAEDEPPG 125
Query: 715 NSSI-PK-ISSVIQYSEFDYMD 774
+ P+ + ++YS+ DY++
Sbjct: 126 ERGLWPRGANGKMRYSDVDYLE 147
Score = 48.8 bits (111), Expect = 5e-06
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +2
Query: 779 WFGMEDLVXKGLXXNIGVSNFNLTXILKIWTKGKVKPAVNQVE 907
W +ED G +IG++NFN+ + ++WTKG +KPAV QVE
Sbjct: 149 WKALEDAHRSGKIRSIGLANFNIGQVEQVWTKGLIKPAVLQVE 191
>Z75553-1|CAA99947.2| 320|Caenorhabditis elegans Hypothetical
protein ZC443.1 protein.
Length = 320
Score = 72.9 bits (171), Expect = 3e-13
Identities = 41/121 (33%), Positives = 63/121 (52%)
Frame = +1
Query: 358 EVATLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIK 537
+V L +G MP I LGT + ++ A+ GYR IDTA +Y NE IG A+
Sbjct: 4 KVPIFTLSNGVLMPSIGLGTWQMTGEEGKTVIRNAVLAGYRHIDTATLYQNEHQIGDALA 63
Query: 538 NKIDDGTVRRDELFIMGKLWSTFHRTGSGGDGLQDSLADLGLEFFDLFLIHNPMSLKEGN 717
+G ++R+++FI K + + L++SL L L++ DL+L H P S K+
Sbjct: 64 ELFAEGILKREDIFITTKAFCHEVAPDVVEEALRNSLKRLRLDYVDLYLAHIPASTKDDG 123
Query: 718 S 720
S
Sbjct: 124 S 124
Score = 33.9 bits (74), Expect = 0.16
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +2
Query: 779 WFGMEDLVXKGLXXNIGVSNFNLTXILKIWTKGKVKPAVNQVE 907
W G E + GL IGVSNFN + I++I KV +Q+E
Sbjct: 135 WRGFEKVYGLGLTKAIGVSNFNESQIVRIMNIQKVPIHASQLE 177
>U21324-6|AAA62562.1| 287|Caenorhabditis elegans Hypothetical
protein C35D10.6 protein.
Length = 287
Score = 69.3 bits (162), Expect = 4e-12
Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Frame = +1
Query: 394 MPVIALGT-ALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDGTVRRD 570
MP+I +GT + + ++++ GYR IDTA +Y NE IG+ ++ + ++R+
Sbjct: 11 MPLIGIGTWQVQKEEILRQVIDAGFKEGYRFIDTAQVYNNEAKIGRILEKLLPANGLKRE 70
Query: 571 ELFIMGKLWSTFHRTGSGGDGLQDSLADLGLEFFDLFLIHNP-MSLKEGNSSIPKI 735
+++I KL + + +++SL++L +E+ DL LIH P SLK N + K+
Sbjct: 71 DIWITSKLAPSNAGVKKARESIEESLSNLKVEYLDLLLIHWPGSSLKSENPANKKL 126
Score = 35.1 bits (77), Expect = 0.071
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 779 WFGMEDLVXKGLXXNIGVSNFNLTXILKIWTKGKVKPAVNQVE 907
W M +++ +G ++GVSNF + + ++ V PAVNQVE
Sbjct: 131 WNVMCEMMAEGKLRSVGVSNFEICHLEELKKDSNVVPAVNQVE 173
>Z71181-2|CAA94895.1| 301|Caenorhabditis elegans Hypothetical
protein K07C5.2 protein.
Length = 301
Score = 67.3 bits (157), Expect = 1e-11
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
Frame = +1
Query: 373 KLRDGTFMPVIALGTALLPPRLTTEI-VETAIDMGYRAIDTAYIYGNEKLIGKAIKNKID 549
K DG MP I LG + + + ++ +E A+ GYR DTA +Y NE +G ++K +
Sbjct: 13 KFSDGYEMPKIGLGISRIETQQDLDVSIEAALKSGYRQFDTANLYKNETFLGNSLKKYLP 72
Query: 550 DGTVRRDELFIMGKLWSTFHRTGSGGD-GLQDSLADLGLEFFDLFLIHNPMSLKEGNSSI 726
+ R+++FI K+ + T + L +SLA L ++ DL LIH P GN
Sbjct: 73 QFGLTREDVFITTKVRTLNENTVEETEKQLANSLATLQTDYVDLLLIHYPRDRDTGNDDD 132
Query: 727 PKISSVIQYSEFDYMDALVRHGRPR 801
+I+ + + ++ GR R
Sbjct: 133 YEINKSRRKIVWQTLEKAKESGRVR 157
Score = 33.1 bits (72), Expect = 0.28
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 779 WFGMEDLVXKGLXXNIGVSNFNLTXILKIWTKGKVKPAVNQVE 907
W +E G +IGVSN+ + +++++ K++P +NQ E
Sbjct: 144 WQTLEKAKESGRVRSIGVSNYEVYHLVEMFEYAKIRPVLNQYE 186
>Z81088-3|CAB03128.1| 283|Caenorhabditis elegans Hypothetical
protein F53F1.3 protein.
Length = 283
Score = 64.1 bits (149), Expect = 1e-10
Identities = 36/117 (30%), Positives = 63/117 (53%)
Frame = +1
Query: 367 TLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKI 546
++KL G P+I LGT + +++ A+ GYR DTA +Y NEK IG A++ +
Sbjct: 2 SIKLNTGYDCPLIGLGTYKIIGDQVLPVLDAALTAGYRLFDTAKVYNNEKEIGDALEILL 61
Query: 547 DDGTVRRDELFIMGKLWSTFHRTGSGGDGLQDSLADLGLEFFDLFLIHNPMSLKEGN 717
++R+++FI K+ + + + +SL+ L + D++LIH P S G+
Sbjct: 62 PKHNLKREDIFITTKMHP--NTVENVKKLVDESLSLLKTSYIDMYLIHYPKSFDYGD 116
>U80844-2|AAB37972.1| 134|Caenorhabditis elegans Hypothetical
protein C07D8.5 protein.
Length = 134
Score = 60.9 bits (141), Expect = 1e-09
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Frame = +1
Query: 262 GKQKRDTGDLTDEQYKTRIAE-LNEAKLKGSVKEVATLKLRDGTFMPVIALGTALLPPRL 438
G+ G+ +D+ + + L ++ LK S + + L L + MP + LGT
Sbjct: 12 GRSSNSDGNASDDGHPPALTPILLKSYLKNSDAK-SHLTLSNAHSMPAVGLGTWQSNAED 70
Query: 439 TTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDGTVRRDELFIMGKLWSTF 606
V+ A+ GY IDTA Y NE+ IG AIK I +G V+R++LFI K+ + F
Sbjct: 71 VISAVKAAVKNGYSLIDTASGYNNEEFIGTAIKEVIAEGVVKREDLFITTKVPNLF 126
>Z81088-2|CAB03127.1| 297|Caenorhabditis elegans Hypothetical
protein F53F1.2 protein.
Length = 297
Score = 59.7 bits (138), Expect = 3e-09
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Frame = +1
Query: 373 KLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDD 552
KL G +P + GT + ++ A+ GYR DTA Y NEK +G+A+K +
Sbjct: 14 KLNSGYNIPFVGFGTYKVTGENVPPAIDAALTAGYRMFDTAKYYLNEKELGEALKILLPK 73
Query: 553 GTVRRDELFIMGKLWSTFHRTGSGGDG-LQDSLADLGLEFFDLFLIHNPMSLKEGNSSI 726
+ R ++F+ K + G +++SL L ++ D++L+H P N +
Sbjct: 74 HGLSRSDVFLTSKFFPESKNCREACRGFVEESLQSLQTDYIDMYLVHYPKPNDSDNDDV 132
Score = 31.9 bits (69), Expect = 0.66
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 788 MEDLVXKGLXXNIGVSNFNLTXILKIWTKGKVKPAVNQVE 907
+E+ G +IGVSN+ + + ++ T KV P NQ+E
Sbjct: 145 LEEAKAAGKVRSIGVSNYEIVHLEELKTYAKVPPCANQLE 184
>U21308-3|AAB93322.2| 321|Caenorhabditis elegans Hypothetical
protein ZK1290.5 protein.
Length = 321
Score = 56.8 bits (131), Expect = 2e-08
Identities = 37/112 (33%), Positives = 55/112 (49%)
Frame = +1
Query: 361 VATLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKN 540
+ T L + MP+I LGT ++ + GYR IDTA YG EK +G A+KN
Sbjct: 2 IPTTVLSNNVEMPLIGLGTTHSGGYYHDAVLHSIKKCGYRLIDTAKRYGVEKQLGIAVKN 61
Query: 541 KIDDGTVRRDELFIMGKLWSTFHRTGSGGDGLQDSLADLGLEFFDLFLIHNP 696
+V R+E+F+ KLW + Q S L ++ D+++IH P
Sbjct: 62 ----CSVPREEMFLSTKLWPV-DCGDEVYNAFQTSCEKLQTDYLDMYMIHMP 108
>U50068-4|AAB37733.1| 287|Caenorhabditis elegans Hypothetical
protein C01G5.5 protein.
Length = 287
Score = 56.4 bits (130), Expect = 3e-08
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Frame = +1
Query: 373 KLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDD 552
KL++G +P +ALGT V+ A+ +GYR+ DTA Y NEK +G A+K +
Sbjct: 3 KLKNGQEIPKLALGTYEAKGDQLFAAVDEALKVGYRSFDTAKYYENEKDLGLALKTLLPR 62
Query: 553 GTVRRDELFIMGKL--WSTFHRTGSGGDGLQDSLADLGLEFFDLFLIHNPMSL 705
+ +++++ K+ +S+ + + +SL L ++ DL L+H P L
Sbjct: 63 HNICSEDIYLTSKVFPYSSKNAAELIRKDVNESLELLDRKYLDLVLVHYPRPL 115
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 779 WFGMEDLVXKGLXXNIGVSNFNLTXILKIWTKGKVKPAVNQVE 907
W +E L +G +IGVSN+ I ++ + ++P VNQ+E
Sbjct: 132 WIALEKLHAEGKIRSIGVSNYEPHHIEEMRSYITIEPQVNQIE 174
>U39654-1|AAA80407.2| 131|Caenorhabditis elegans Hypothetical
protein C56G3.2 protein.
Length = 131
Score = 31.9 bits (69), Expect = 0.66
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 595 WSTFHRTGSGGDGLQDSLADLGLEFFDLFLIHNPMSLKEGNSSIPKISSVIQ--YSEFD 765
W+ G L+DSL L LE+ DL+L H P + + S KI S ++ + +FD
Sbjct: 53 WTNELAPGRLEGALRDSLKKLHLEYVDLYLAHMPTAFSDDMSQ--KIESSVEDIWRQFD 109
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -3
Query: 718 CCLPSTTSDCG*----GRGRKTPSPGLPVNPAGRLHQIRCD 608
CCLP G GR K +PGLP NP GR Q CD
Sbjct: 99 CCLPGAAGPAGTPGKPGRPGKPGAPGLPGNP-GRPPQQPCD 138
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -3
Query: 718 CCLPSTTSDCG*----GRGRKTPSPGLPVNPAGRLHQIRCD 608
CCLP G GR K +PGLP NP GR Q CD
Sbjct: 99 CCLPGAAGPAGTPGKPGRPGKPGAPGLPGNP-GRPPQQPCD 138
>U00033-13|AAC48300.1| 439|Caenorhabditis elegans Mechanosensory
abnormality protein14 protein.
Length = 439
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +1
Query: 445 EIVETAIDMGYRAIDTAYIYG---NEKLIGKAI 534
+IVETAI G IDT Y Y +E ++GKA+
Sbjct: 118 KIVETAIKQGINYIDTGYWYSQSRSESILGKAL 150
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 748 GSLMISSV*NCCLPSTTSDCG*----GRGRKTPSPGLPVNPAGRLHQIRCD 608
G S +CCLP G GR K +PGLP NP GR Q C+
Sbjct: 89 GGAQSGSCESCCLPGPPGPAGTPGKPGRPGKPGAPGLPGNP-GRPPQQPCE 138
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 748 GSLMISSV*NCCLPSTTSDCG*----GRGRKTPSPGLPVNPAGRLHQIRCD 608
G S +CCLP G GR K +PGLP NP GR Q C+
Sbjct: 89 GGAQSGSCESCCLPGPPGPAGTPGKPGRPGKPGAPGLPGNP-GRPPQQPCE 138
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 748 GSLMISSV*NCCLPSTTSDCG*----GRGRKTPSPGLPVNPAGRLHQIRCD 608
G S +CCLP G GR K +PGLP NP GR Q C+
Sbjct: 89 GGAQSGSCESCCLPGPPGPAGTPGKPGRPGKPGAPGLPGNP-GRPPQQPCE 138
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -3
Query: 718 CCLPSTTSDCG*----GRGRKTPSPGLPVNPAGRLHQIRCD 608
CCLP G GR K +PGLP NP GR Q C+
Sbjct: 104 CCLPGAAGPAGTPGKPGRPGKAGAPGLPGNP-GRPPQQPCE 143
>Z74039-5|CAA98504.1| 479|Caenorhabditis elegans Hypothetical
protein K03B8.5 protein.
Length = 479
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 680 KRSKNSKPRSASESCRPSPPDPVRWNVLHNLPIMKSSSRLTVPSSILFLIAF 525
K ++SK S C PP + HN I++ SR T+PS++ F F
Sbjct: 420 KFKEDSKITSPVVCCTDKPPYKNVFKSSHNPTIIELYSRTTLPSAVTFKYRF 471
>Z72517-3|CAA96695.1| 717|Caenorhabditis elegans Hypothetical
protein T28F4.4 protein.
Length = 717
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -1
Query: 630 VSTRSGAMECTPQFTHNEKLVSPHGAVVNLVLDRFSYELFVAVNISGIYSSVAHINSSLH 451
V G QFT + + GA+ +VL + L +S +++++AH+ SS
Sbjct: 417 VDNSYGDAHINSQFTKEDFVHRTKGAIAKIVLVKERIRLAKVPALSELFNALAHVMSSPE 476
Query: 450 YFR 442
FR
Sbjct: 477 NFR 479
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -3
Query: 718 CCLPSTTSDCG*----GRGRKTPSPGLPVNPAGRLHQIRCD 608
CCLP G GR K +PGLP NP GR Q C+
Sbjct: 99 CCLPGAAGPAGTPGKPGRPGKPGAPGLPGNP-GRPPQQPCE 138
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -3
Query: 718 CCLPSTTSDCG*----GRGRKTPSPGLPVNPAGRLHQIRCD 608
CCLP G GR K +PGLP NP GR Q C+
Sbjct: 99 CCLPGAAGPAGTPGKPGRPGKPGAPGLPGNP-GRPPQQPCE 138
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -3
Query: 718 CCLPSTTSDCG*----GRGRKTPSPGLPVNPAGRLHQIRCD 608
CCLP G GR K +PGLP NP GR Q C+
Sbjct: 99 CCLPGAAGPAGTPGKPGRPGKPGAPGLPGNP-GRPPQQPCE 138
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -3
Query: 718 CCLPSTTSDCG*----GRGRKTPSPGLPVNPAGRLHQIRCD 608
CCLP G GR K +PGLP NP GR Q C+
Sbjct: 99 CCLPGAAGPAGTPGKPGRPGKPGAPGLPGNP-GRPPQQPCE 138
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -3
Query: 718 CCLPSTTSDCG*----GRGRKTPSPGLPVNPAGRLHQIRCD 608
CCLP G GR K +PGLP NP GR Q C+
Sbjct: 99 CCLPGAAGPAGTPGKPGRPGKPGAPGLPGNP-GRPPQQPCE 138
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = -3
Query: 718 CCLPSTTSDCG*----GRGRKTPSPGLPVNPAGRLHQIRCD 608
CCLP G GR K +PGLP NP G Q CD
Sbjct: 66 CCLPGAAGPAGTPGKPGRPGKPGAPGLPGNP-GHPPQQPCD 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,570,265
Number of Sequences: 27780
Number of extensions: 412960
Number of successful extensions: 1358
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -