Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A10
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    70   4e-13
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    55   1e-08
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   4.8  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    26   6.3  

>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 38/138 (27%), Positives = 68/138 (49%)
 Frame = +2

Query: 464 WGPVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNXNLPEIQL 643
           W P  L+QN    ++V    PWW +I+L T+ VR+ + P++I S RNS +++   PE++ 
Sbjct: 65  WWPYALIQNTAYTINVYAGAPWWVSIILTTLGVRLALTPVMIASFRNSTKLSVIQPEMKK 124

Query: 644 LQMKMTQARQTGNQIEAARYAQEMMLFMXRKRIEPS*KFNCSISSNTSGYILFYGIXRNG 823
               +  A+   +Q+   +++  +     +  + P   F   ++ +   +  FY I +  
Sbjct: 125 ELEAIKTAKLDNDQLALNQHSIALRGIYLKHNVNPFAIFILPLTQSAVFFSFFYAIRKMS 184

Query: 824 *LSCRSXTIGGLWWFVXL 877
            LS    T GGL WF  L
Sbjct: 185 RLSVDGFTTGGLAWFKDL 202


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 26/132 (19%), Positives = 55/132 (41%)
 Frame = +2

Query: 470 PVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNXNLPEIQLLQ 649
           P  ++QN    LH+   +PWW +I    + +R+ +FP+++   + SA++    P++    
Sbjct: 96  PHNILQNGLNTLHIWSGLPWWASIAACAVAMRIAVFPIMLKMMKTSAKLAIINPKVAEHM 155

Query: 650 MKMTQARQTGNQIEAARYAQEMMLFMXRKRIEPS*KFNCSISSNTSGYILFYGIXRNG*L 829
             +++A+  GN     +   ++        + P    +  +         FY +     +
Sbjct: 156 SVLSKAKAEGNSELMMQATTQIQNLYKVNNVNPLNLLSAPVFQGILFISFFYALKTMAGV 215

Query: 830 SCRSXTIGGLWW 865
                T GG WW
Sbjct: 216 PVEGFTDGGFWW 227


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/79 (21%), Positives = 38/79 (48%)
 Frame = +2

Query: 473  VGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNXNLPEIQLLQM 652
            +G+ +N    + +   + ++ +++LG + +    FPL   S  N A+ N     ++LL +
Sbjct: 1800 IGIKKNDVVAVFIDKSLDYY-SLMLGVLRIGAFFFPLEHCSSLNFAKENLLRTNVKLLIV 1858

Query: 653  KMTQARQTGNQIEAARYAQ 709
                  +  NQ+E  ++ Q
Sbjct: 1859 DKFLPFEDVNQVEIDKFRQ 1877


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 606 LFLCDKITSGNITTLTTIVPKTIAPHHGTSKVTCRYSKQ 490
           L LC +   G  T   T+   TI  H G  KV  +++++
Sbjct: 31  LMLCGESGLGKTTFCNTLFSTTIKSHMGPEKVRAKHAEK 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,481,287
Number of Sequences: 5004
Number of extensions: 68859
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)