Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_A09
(899 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 209 5e-55
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 209 5e-55
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 29 0.90
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 28 2.1
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 8.4
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 26 8.4
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 26 8.4
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 26 8.4
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 209 bits (510), Expect = 5e-55
Identities = 93/134 (69%), Positives = 119/134 (88%)
Frame = +1
Query: 175 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 354
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 355 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 534
+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A+ MR +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 535 MARYLSGSVKEILG 576
+A+ LSG+VKEILG
Sbjct: 121 LAKELSGTVKEILG 134
Score = 43.6 bits (98), Expect = 4e-05
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +2
Query: 563 KRFLGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 667
K LGTA SVGCTV+G+ PHD+ +I++G + I +
Sbjct: 130 KEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 209 bits (510), Expect = 5e-55
Identities = 93/134 (69%), Positives = 119/134 (88%)
Frame = +1
Query: 175 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 354
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 355 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 534
+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A+ MR +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 535 MARYLSGSVKEILG 576
+A+ LSG+VKEILG
Sbjct: 121 LAKELSGTVKEILG 134
Score = 43.6 bits (98), Expect = 4e-05
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +2
Query: 563 KRFLGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 667
K LGTA SVGCTV+G+ PHD+ +I++G + I +
Sbjct: 130 KEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 29.1 bits (62), Expect = 0.90
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 605 PQYIQLTVLCPRISFTEPERYRAIDLFLMIFAMPI-TSSREMLPL 474
P L L R+ ++PE DLFL I A+ + TSS+ +LPL
Sbjct: 1466 PSLPPLIDLVKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/76 (23%), Positives = 32/76 (42%)
Frame = +1
Query: 343 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIM 522
K + Q ++ N + V ++ L LKE +D++K ++ S + A+
Sbjct: 23 KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82
Query: 523 RNRSMARYLSGSVKEI 570
RNR L +V I
Sbjct: 83 RNRKARENLKVNVSSI 98
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 477 RQHLP*RCNRHCEDHEKQINGPVPFWLSKRD 569
+ H+ +C HC H + PVP +K D
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVPHNGTKPD 192
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 456 LFTVTRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 349
+FT+ R LK + CR N + GLS C +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 513 EDHEKQINGPVPFWLSKRDSWAQHSQLDVL 602
ED+E +I + +LS +W + S LDVL
Sbjct: 1826 EDYELEIVSTLTMFLSNNLTWFRKSTLDVL 1855
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = -2
Query: 676 KHLFINGQSSAVDVINKIMWRPALHSTS 593
K ++++ ++ A+D++NK M A+ STS
Sbjct: 168 KTIYVSSETEALDILNKGMGSRAVASTS 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,864
Number of Sequences: 5004
Number of extensions: 58711
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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