Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_A09
(899 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 210 1e-54
02_05_0416 + 28791512-28792012 206 1e-53
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311... 30 2.2
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 29 3.8
04_01_0314 - 4243928-4244361,4245178-4245415 29 6.7
03_06_0776 - 36176390-36177589 29 6.7
12_02_0178 - 14941342-14941391,14941909-14942002,14942498-149427... 28 8.8
>04_04_1026 + 30214437-30214937
Length = 166
Score = 210 bits (513), Expect = 1e-54
Identities = 100/135 (74%), Positives = 121/135 (89%), Gaps = 1/135 (0%)
Frame = +1
Query: 175 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 351
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 352 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 531
V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA+IMRNR
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR 120
Query: 532 SMARYLSGSVKEILG 576
SMA+ ++G+VKEILG
Sbjct: 121 SMAKEMAGTVKEILG 135
Score = 39.5 bits (88), Expect = 0.004
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +2
Query: 563 KRFLGTAQSVGCTVEGRPPHDLIDDINSGALTI 661
K LGT SVGCTV+G+ P DL +I+ G + I
Sbjct: 131 KEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163
>02_05_0416 + 28791512-28792012
Length = 166
Score = 206 bits (504), Expect = 1e-53
Identities = 98/135 (72%), Positives = 120/135 (88%), Gaps = 1/135 (0%)
Frame = +1
Query: 175 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 351
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 352 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 531
V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA++MR R
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRPR 120
Query: 532 SMARYLSGSVKEILG 576
SMA+ ++G+VKEILG
Sbjct: 121 SMAKEMAGTVKEILG 135
Score = 39.5 bits (88), Expect = 0.004
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +2
Query: 563 KRFLGTAQSVGCTVEGRPPHDLIDDINSGALTI 661
K LGT SVGCTV+G+ P DL +I+ G + I
Sbjct: 131 KEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163
>02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,
3110157-3111444
Length = 1821
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +1
Query: 463 NIKHN---GNISLEDVIGIAKIMRNRSMARYLSGSVKEILGHSTV 588
N+ HN G + LE+++ + I+ +LSG++KE+ H+T+
Sbjct: 1213 NLSHNSLSGELPLEELVSSSSIVILDVSFNHLSGALKELSAHTTI 1257
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 331 WKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 459
W + V V + + V+P+A A +IRA+ + P R++Q
Sbjct: 33 WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75
>04_01_0314 - 4243928-4244361,4245178-4245415
Length = 223
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 385 IAVVPSAAALIIR--ALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGS 558
+ +V S IIR + E +K ++HN S V+G+ ++NRS YL+
Sbjct: 85 VLLVSSILLAIIRLICISEINNPQKSVSKLRHNTTTSRTIVVGLTTSLKNRS---YLNSP 141
Query: 559 VKEI-LGHSTVSW 594
++ H + W
Sbjct: 142 KNQVNQSHEHIEW 154
>03_06_0776 - 36176390-36177589
Length = 399
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 457 QKNIKHNGNISLEDVIGIAKIMRNRSMARY 546
+K+I++ G++ LE + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142
>12_02_0178 -
14941342-14941391,14941909-14942002,14942498-14942716,
14943409-14943492,14943783-14944067,14944349-14944501,
14944618-14944740,14945429-14945495,14946122-14946309,
14947134-14947250,14947720-14947812,14948377-14948459,
14948565-14948610
Length = 533
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 462 KYQTQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRDSWAQ 581
K+ + LP RCN+ C + + P PF S+ W +
Sbjct: 145 KWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIRSREFLWQE 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,573,802
Number of Sequences: 37544
Number of extensions: 420846
Number of successful extensions: 1071
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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