Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A09
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   219   2e-57
Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical p...    48   9e-06

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  219 bits (535), Expect = 2e-57
 Identities = 100/134 (74%), Positives = 121/134 (90%)
 Frame = +1

Query: 175 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 354
           MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T 
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60

Query: 355 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 534
           +LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ +I IA+IMR RS
Sbjct: 61  KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRS 120

Query: 535 MARYLSGSVKEILG 576
           MA+ L G+VKEILG
Sbjct: 121 MAKKLEGTVKEILG 134



 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +2

Query: 563 KRFLGTAQSVGCTVEGRPPHDLIDDINSGALTI 661
           K  LGTAQSVGCT++G+ PHD+I+ I +G + I
Sbjct: 130 KEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 162


>Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical
           protein JC8.3c protein.
          Length = 50

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +2

Query: 563 KRFLGTAQSVGCTVEGRPPHDLIDDINSGALTI 661
           K  LGTAQSVGCT++G+ PHD+I+ I +G + I
Sbjct: 15  KEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 47



 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +1

Query: 520 MRNRSMARYLSGSVKEILG 576
           MR RSMA+ L G+VKEILG
Sbjct: 1   MRPRSMAKKLEGTVKEILG 19


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,057,742
Number of Sequences: 27780
Number of extensions: 341124
Number of successful extensions: 880
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)