Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A08
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    27   2.7  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    26   6.3  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   8.4  

>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 719 KAPRFPEXRKADRYPVSGRVGTGERTRELPGGNAW 615
           +AP+F E  + D Y V G V +   TRE   GN +
Sbjct: 192 RAPKF-EAPEVDNYVVMGIVASNSGTRETVNGNKY 225


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 564 KSTLKSEVAKPDRTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSXFGEAW 713
           + T K  V + + T++   + P K+P  +    P+A  +P  LS F E W
Sbjct: 33  RETSKDPVTQQECTLE--DLVPVKVPDFVRPRPPSATSLPALLSLFQEEW 80


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +1

Query: 553 EHHKNRRSSQRWRNPTGL*RYQAF----PPGSSLVRSPVPTLPLTGY 681
           ++HKNR+S+     P GL  Y+A     PPG     +      L GY
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGY 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,113,969
Number of Sequences: 5004
Number of extensions: 60462
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)