Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A07
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    36   0.006
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.9  
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p...    26   6.5  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   8.6  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    26   8.6  

>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 24/102 (23%), Positives = 44/102 (43%)
 Frame = +3

Query: 501 ILKLMEPCDHILEIQFPLRRDSGDXEMILGYRAQHSTHRTPTKGGIRFSTDXTRDEVKAL 680
           +L ++   + +LE +     D G+  +  GYR Q ++   P KGG+RF        +K L
Sbjct: 35  VLPIISIPERVLEFRVTWEDDKGNCRVNTGYRVQFNSALGPYKGGLRFHPSVNLSILKFL 94

Query: 681 SXFDDLQVRVRLTCLSAVLRPGIRIXPKEYSEHELEXITRRF 806
             F+ +             + G    PK  S++E+   ++ F
Sbjct: 95  G-FEQIFKNALTGLPMGGGKGGSDFDPKGKSDNEIRRFSQAF 135


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 522 CDHILEIQFPLRR 560
           CDHI+ +Q+PL+R
Sbjct: 120 CDHIVNLQYPLKR 132


>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 202

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = -3

Query: 597 RDSLISFRNRQNRASEEIESQECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQACLRQLDR 418
           R+SL   +N  + AS+  + Q+       +L +   S  + + +    NL+   LRQ   
Sbjct: 45  RESLGILQNVTHEASQPFQPQDHPSEAAALLMFHSSSIYNKRCLMAYHNLRLQRLRQYCW 104

Query: 417 LGGKNILPCGRTS-DSHL*EYL*AYLE 340
            GGK +  C  TS  ++  +YL  Y E
Sbjct: 105 SGGKRMESCLDTSLSTYERDYLTRYSE 131


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 22/76 (28%), Positives = 34/76 (44%)
 Frame = +3

Query: 258 QNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSANPKFFHMVEYFFHRACQVVED 437
           QN+++N   R+I   ++   R Y    IP   +D    A     H  E F+ R  Q    
Sbjct: 667 QNKSMNERLRVIGKRIDHLERAYRREAIPLWEEDAKQQAE----HDREIFYEREKQ---R 719

Query: 438 KLVEDLKSRTPIEEKK 485
           K V++ K    I++KK
Sbjct: 720 KEVQERKHEQAIKDKK 735


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 600 VRDSLISFRNRQNRASEEIES-QECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQACLRQ 427
           ++D +   + +  + + EIES  +  + +    EYR LS +  + VSL S + Q   R+
Sbjct: 287 IKDYVSHLQTKSTKKASEIESIADMKQFLEAYPEYRRLSGNVSKHVSLVSEISQVVQRE 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,598,314
Number of Sequences: 5004
Number of extensions: 72852
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)