Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A07
         (917 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   2.9  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   2.9  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   2.9  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.9  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 181 YDNRVRNRVALHLLNF*NKLIIFVXFMLDCSDDPPRP 71
           Y+N    ++  + +N+  ++ I V   + C + PPRP
Sbjct: 102 YNNNNYKKLQYYNINYIEQIPIPVPVPIYCGNFPPRP 138


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 181 YDNRVRNRVALHLLNF*NKLIIFVXFMLDCSDDPPRP 71
           Y+N    ++  + +N+  ++ I V   + C + PPRP
Sbjct: 102 YNNNNYKKLQYYNINYIEQIPIPVPVPIYCGNFPPRP 138


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 181 YDNRVRNRVALHLLNF*NKLIIFVXFMLDCSDDPPRP 71
           Y+N    ++  + +N+  ++ I V   + C + PPRP
Sbjct: 102 YNNNNYKKLQYYNINYIEQIPIPVPVPIYCGNFPPRP 138


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 181 YDNRVRNRVALHLLNF*NKLIIFVXFMLDCSDDPPRP 71
           Y+N    ++  + +N+  ++ I V   + C + PPRP
Sbjct: 102 YNNNNYKKLQYYNINYIEQIPIPVPVPIYCGNFPPRP 138


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 380 EVLPHGRIFFPPSLSSCRRQ 439
           +VLP+G + FPP  +   RQ
Sbjct: 53  QVLPNGNLVFPPFRAEDYRQ 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,663
Number of Sequences: 438
Number of extensions: 4578
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)