Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A05
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    77   5e-15
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      53   5e-08
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    41   3e-04
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    35   0.019
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    30   0.40 
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    28   2.1  
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   4.9  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    26   6.5  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   6.5  

>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 76.6 bits (180), Expect = 5e-15
 Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 5/121 (4%)
 Frame = +2

Query: 353 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQL-GVPAQETFQTVDLW 529
           L+ G +LC++        I+    S+M F  MENI+AF+  A+Q+  VP+Q+ FQT DL+
Sbjct: 31  LQSGVILCRICKEALGANIR-YKESNMPFVQMENISAFINYAQQVVHVPSQDMFQTSDLF 89

Query: 530 ERQNLNSVVICLQSLGRKAGTY--GK-PSIGPKEAEKNVRNFSEEQLRA-GQGVISLQYG 697
           ER+N   V+  + S  R A     GK   +GPK AEK  R FS +Q R   +GV SLQYG
Sbjct: 90  ERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKLAEKKPRVFSAQQQREFREGVNSLQYG 149

Query: 698 S 700
           S
Sbjct: 150 S 150


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 53.2 bits (122), Expect = 5e-08
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
 Frame = +2

Query: 317 TPQGDMDNFYEVLKDGTLLCKLANNIHPN-MIKKINTSSMAFKCMENINAFLEAARQLGV 493
           T  G    F + L++G +L  L     P+ +IK   ++ + F+  +NIN FL+    +G+
Sbjct: 57  TDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGL 116

Query: 494 PAQETFQTVDLWERQNLNSVVICLQSL 574
           P    F+  D++E +NL  V+ C+ +L
Sbjct: 117 PEIFHFELTDIYEGKNLPKVIYCIHAL 143


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = +2

Query: 329 DMDNFYEVLKDGTLLCKLANNIHPNMIKKINTS-SMAFKCMENINAFLEAARQLGVPAQE 505
           ++D+F + L +G +LC+LA   +P +         ++ +    +NAF      +G+    
Sbjct: 84  NLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNTVYLNAFFHFLDFIGMFTPF 143

Query: 506 TFQTVDLWERQNLNSVVICLQSL 574
            F+T DL  R N+  V+ CL +L
Sbjct: 144 RFETKDLVRRFNIPKVIYCLHAL 166


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 34.7 bits (76), Expect = 0.019
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
 Frame = +2

Query: 341 FYEVLKDGTLLCKLANNIHPNMI------KKINTSSMA-FKCMENINAFLEAARQLG 490
           F++  KDG +L KL N+  P+ I      K+ N   +  FKC+EN N  + +A+ +G
Sbjct: 145 FFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201



 Score = 30.3 bits (65), Expect = 0.40
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
 Frame = +2

Query: 338 NFYEVLKDGTLLCKLANNIHPNMI--KKINTS------SMAFKCMENINAFLEAARQLG 490
           +F+  L+DG +L +  + I PN +  KK+N +       M FK +EN N  ++  +  G
Sbjct: 406 DFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQG 464


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 19/89 (21%), Positives = 35/89 (39%)
 Frame = +2

Query: 410 KKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAG 589
           ++  +S  A    E + AF+E A+Q G+P  E       W+   +      + +L +   
Sbjct: 118 RRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLR 177

Query: 590 TYGKPSIGPKEAEKNVRNFSEEQLRAGQG 676
            Y    +      +NVR    +    G+G
Sbjct: 178 YYIINKLNSDPCWRNVRFILSDASVPGEG 206


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 466 PRSRKTVGCTGTGNFSNCRPVGETESQLRRDLLAVTGQKGWNLR 597
           P+ +  V CTG G+      V   +S    D L +TG+ G  L+
Sbjct: 119 PKFKNIVDCTGAGDVDTSVEVAAADS---NDYLTITGRSGRTLK 159


>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
 Frame = +2

Query: 353 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENI-NAFLEAARQLGVPAQETFQTVDLW 529
           LK+ T +  L+++IHPN    +++ S      +N+ N   E  + L +      + VD +
Sbjct: 6   LKENTEIINLSSSIHPNRDSYLDSQSDPLN--QNLYNIETENVKDLNI------EDVDYY 57

Query: 530 ERQNLNSVVICLQSLGRKAGTYGKPSIGPKEAEKNVRN 643
           E+  L +  I  +++     TY K S+G     +N  N
Sbjct: 58  EK--LQNFKIVDENIDPGLRTYSKRSVGVNNTFQNPCN 93


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
 Frame = +2

Query: 83  PVDPPACLHSVHSDFTFYRVCDLFK*FIKLLLVRNGKQ-PSDQIRICS*SPEKDQQQIQR 259
           P  PP  L S H +FT          F+  L  R+ +   S   RI   +P  D  QI  
Sbjct: 166 PPIPPEFLKSRHKEFTIPNPLQFISNFLSNLFSRDTRYLKSSHGRIIIINPYDDSSQIDE 225

Query: 260 GAGPRVLVN 286
             G   + N
Sbjct: 226 RTGKPYMQN 234


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 713 WRPYLNRTEEI*LPDQPGAAPRRSFARSSQLLSVLLTASRRFQ 585
           W  YLN  +E  +PD P     ++    + +L V+ T  R ++
Sbjct: 112 WNAYLNTLDETCMPDSPLLWKDKTCLEGTSMLDVINTNLRVYK 154


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 794 ACNKPFKCARLDSFTCVSCY 735
           ACN   K  R DSF C  C+
Sbjct: 61  ACNTCLKIIRNDSFHCTKCF 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,719,500
Number of Sequences: 5004
Number of extensions: 79504
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)