Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A04
         (933 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0098 - 28334865-28336114,28336228-28336357                       30   3.0  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   7.0  
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206...    29   7.0  

>11_08_0098 - 28334865-28336114,28336228-28336357
          Length = 459

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 797 RXWGKXPRFPRREKG-RTRYSGKRQGS 720
           R WGK  R  RREK  R R  GKR+ S
Sbjct: 10  RGWGKKRRIQRREKSKREREKGKRRSS 36


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 410 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 565
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>03_02_0910 +
           12317493-12317960,12319678-12319734,12320592-12320666,
           12321219-12321299,12321472-12321546,12321818-12321862,
           12321975-12322064,12322153-12322254,12322366-12322420,
           12324966-12325027,12325521-12325555,12325877-12326115,
           12326219-12328035
          Length = 1066

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 588 FHRLRPPDEHHKNRPXKSE 644
           +H  RPP  HH +RP KS+
Sbjct: 821 YHSCRPPPCHHHDRPWKSQ 839


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,720,734
Number of Sequences: 37544
Number of extensions: 371474
Number of successful extensions: 717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)