Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_A02
(905 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0154 - 18549806-18550161,18550271-18550907 32 0.55
01_06_1561 - 38255397-38255595,38255712-38255867,38256040-38257163 31 1.3
10_02_0141 + 5761931-5762020,5762170-5762201,5762453-5762604,576... 31 1.7
05_07_0163 - 28094574-28094726,28095248-28095382,28095771-280959... 29 3.8
01_06_0264 + 28005997-28006823,28007107-28007290,28007603-28007701 29 5.1
01_03_0131 - 12858377-12858664,12859585-12859975,12863357-128633... 29 5.1
04_04_1628 + 34874688-34874915,34875182-34875232,34875532-348756... 29 6.7
04_04_0454 + 25348189-25348516,25349154-25349869 29 6.7
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 29 6.7
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575... 29 6.7
03_01_0655 + 4797516-4797624,4797716-4798485,4798988-4799049,479... 28 8.9
02_04_0289 + 21615745-21616155,21617417-21617870,21618162-216182... 28 8.9
>05_04_0154 - 18549806-18550161,18550271-18550907
Length = 330
Score = 32.3 bits (70), Expect = 0.55
Identities = 16/61 (26%), Positives = 22/61 (36%)
Frame = +1
Query: 472 DSVHARCFPVLHGFGFSWPPELDCTLFPAENNHEHMCMEGPGERAPPVGSIPLNATGACR 651
D VH RC GF P + T PA E + G P + P T + +
Sbjct: 119 DCVHHRCRTCCKSRGFDCPTHVRSTWVPAARRRERQQLAGAASSPPTSSAFPAATTASAK 178
Query: 652 R 654
+
Sbjct: 179 K 179
>01_06_1561 - 38255397-38255595,38255712-38255867,38256040-38257163
Length = 492
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -3
Query: 450 DRQRHFIRTHGNVDRTQKQMKLGGAAVLDQRTERLQRDIGISLQ 319
++ RH +R G D Q +GG V+ QR E+L D GIS +
Sbjct: 255 NKPRH-LRITGVDDPETVQRTVGGLKVIGQRLEKLAEDCGISFE 297
>10_02_0141 +
5761931-5762020,5762170-5762201,5762453-5762604,
5763688-5763770,5764689-5764766,5764884-5764979,
5765076-5765345
Length = 266
Score = 30.7 bits (66), Expect = 1.7
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +3
Query: 474 QCARQMFPCASWFRIFLAPGARLHTVSSGKQSRTHVYGGARRK 602
+C +++ CA W+ + GAR +++ +G + GA K
Sbjct: 43 ECGIELYECALWYGLTFTKGARFYSLETGNTLAMSILLGAYSK 85
>05_07_0163 -
28094574-28094726,28095248-28095382,28095771-28095923,
28096010-28096208,28096312-28096349,28096849-28097020,
28097666-28097788,28097869-28098284
Length = 462
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 494 KHLACTLSHSPRQGPIGSATLSV 426
KHLAC S SP GP S +L++
Sbjct: 27 KHLACAASRSPSPGPSSSRSLAL 49
>01_06_0264 + 28005997-28006823,28007107-28007290,28007603-28007701
Length = 369
Score = 29.1 bits (62), Expect = 5.1
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 215 PSPRPPCGRANPLKWQCARTSATTRPVCRTWPGTPCKLMPISRCKRSV-RWSSTAA 379
P PRPP GR + A AT R P P +L P RC RS W +TAA
Sbjct: 9 PPPRPPLGRGRLVGVGPAPAPATASQSNR--PVPPLQL-PRCRCHRSEGPWRTTAA 61
>01_03_0131 -
12858377-12858664,12859585-12859975,12863357-12863397,
12864745-12865419
Length = 464
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 640 GACRRLIKP--NSWVWVRGSGRCAQFCDAEVLWETGERRAXEVWLA 771
G RRLI+ W W+R G A C+ EV RR WLA
Sbjct: 108 GGQRRLIRRWGGLWRWIRRRGGAAAACEEEVEGRRRIRRWGLRWLA 153
>04_04_1628 +
34874688-34874915,34875182-34875232,34875532-34875652,
34875739-34875788,34876395-34876524,34877007-34877170,
34877262-34877300,34877301-34877464,34877808-34877931,
34878002-34878103,34878208-34878297
Length = 420
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -3
Query: 255 FNGFARPHGGLGDGARNEANSKQNRYNAQHDELLFTRESSQSLYRRSLRASC 100
F G GG G+G N++ + + A H F +++ YRR+++ +C
Sbjct: 16 FVGVGGGGGGGGEGEGNQSPPNRRFFVAVHVGAGFHAPANEKAYRRAMKRAC 67
>04_04_0454 + 25348189-25348516,25349154-25349869
Length = 347
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 330 ISLQGVPGQVRHTGLVVADVLAHCHFNGFARPHGGLGDGARNEANSK 190
++L G ++++ L+ VLA C NGFA G GD A E K
Sbjct: 255 LNLGGGVWRIKYHPLIADVVLAACMHNGFAIVKVGTGDAAVVETYCK 301
>03_06_0327 - 33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 28.7 bits (61), Expect = 6.7
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Frame = -3
Query: 291 GLVVADVLAH-CHFNGFARPHGGLGDGARNEANSKQNRYNAQHDELLFTRESSQSL---- 127
G VV + H F+ + H G+ + S+ Y+ +DE FT ++ QSL
Sbjct: 914 GTVVDRQICHPTEFDFYLCSHAGI------QGTSRPTHYHVLYDENHFTADALQSLTNNL 967
Query: 126 ---YRRSLRASCGGRRDGRP 76
Y R RA GRR RP
Sbjct: 968 CYTYARCTRAVSVGRRRSRP 987
>03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,
5753632-5753820,5753911-5754013,5754087-5754269,
5754392-5754484,5755031-5755219,5756133-5756327
Length = 1306
Score = 28.7 bits (61), Expect = 6.7
Identities = 23/91 (25%), Positives = 39/91 (42%)
Frame = -1
Query: 767 SHTSXALRSPVSHRTSASQNWAQRPDPLTHTQLFGLINLLHAPVAFNGILPTGGALSPGP 588
S+ + + R ++S S N+ +RP +TH +P A NGI G+ +P
Sbjct: 1182 SYRNDSYRHETGAQSSGSTNYIRRPGNMTHGD--------PSPSASNGIGALSGSSAPYF 1233
Query: 587 SIHMCS*LFSAGNSVQSSSGGQENPKP*STG 495
+ C + G+S + G P P + G
Sbjct: 1234 MYYSCEPGTNHGSSSEPLEFGSLGPVPTADG 1264
>03_01_0655 +
4797516-4797624,4797716-4798485,4798988-4799049,
4799267-4799336,4799971-4800058,4801070-4801227,
4801316-4801459,4801561-4801689,4801797-4801964
Length = 565
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1
Query: 860 CSFPAPPRSPHANCAATA 807
CS PAPPR+P A+C A A
Sbjct: 10 CS-PAPPRAPAASCGAAA 26
>02_04_0289 +
21615745-21616155,21617417-21617870,21618162-21618217,
21618307-21618437,21618565-21618727
Length = 404
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -3
Query: 504 KHRETSGVHTVTQSSTGPDRQRHFIRTHGNVDRTQKQMKLGGA 376
K+R G + ++TG R F+R + D+T ++ GA
Sbjct: 228 KYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAMTEMNGA 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,710,718
Number of Sequences: 37544
Number of extensions: 780217
Number of successful extensions: 2400
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2397
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -