Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A02
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   2.2  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   6.7  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   6.7  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   6.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.8  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +1

Query: 418 PMCTDKVALPIGPCRGLCDSVHARCFPVLHGFGFSWPPELDCTLF 552
           P  T  + +P+ PC  +C+  +   + V    G  + P L    F
Sbjct: 222 PFNTTTIFVPVKPCPWICELTNDAGYVVYSALGSFYIPMLVMLFF 266


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 477 TVTQSSTGPDRQRHFIRTHGNVDRTQKQMKL 385
           +V ++ TG D+Q+      GN+D   K+++L
Sbjct: 31  SVCKTETGIDQQKANDVIEGNIDVEDKKVQL 61


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 664 PNSWVWVRGSGRCAQFC 714
           P++ ++ R  GRC +FC
Sbjct: 38  PSNEIFSRCDGRCQRFC 54


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 664 PNSWVWVRGSGRCAQFC 714
           P++ ++ R  GRC +FC
Sbjct: 38  PSNEIFSRCDGRCQRFC 54


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 266 ARTSATTRPVCRTWPG-TPCKLMPISR 343
           AR++ T R   R WPG +  +  PI R
Sbjct: 907 ARSNVTPRSPGRAWPGDSDIRQRPIPR 933


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -1

Query: 743 SPVSHRTSASQNWAQRPDPLTHTQLFGLINLLHAP 639
           +P  H + A+    Q   PL H+     I + H P
Sbjct: 429 TPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTP 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 285,879
Number of Sequences: 438
Number of extensions: 7721
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)