Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A01
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    29   0.90 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.8  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   4.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   8.4  

>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 594 P*PTSSRTGAPQTRRGRAAHQPSSTPSSWRVTSPTASGEVIKTCEXSFND 743
           P PT+     P+  RG+A ++PS    +W++       E+I   E   ++
Sbjct: 337 PVPTNVVKANPRVNRGKAGYEPSENIINWKIPRFLGETELIFYAEVELSN 386


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 25/90 (27%), Positives = 43/90 (47%)
 Frame = +3

Query: 465 LTSRSIR*TAPASRSYSSMLRLKNASTRPSSLTTCS*GES*QAP*PTSSRTGAPQTRRGR 644
           ++S S+  + P + S  S L    +S++PS  +T S   S  AP  TSS +    +    
Sbjct: 159 ISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS-SYLSSSSVVS 217

Query: 645 AAHQPSSTPSSWRVTSPTASGEVIKTCEXS 734
           ++  PSS+ SS   +S  ++  +  T   S
Sbjct: 218 SSSSPSSSSSSTLTSSSLSTSSIPSTSSSS 247


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 442 NPVLSHG-GLLLDRYGEPPRLREAILRC 522
           +P L +G G+L DRYG      EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 25/80 (31%), Positives = 40/80 (50%)
 Frame = +3

Query: 465 LTSRSIR*TAPASRSYSSMLRLKNASTRPSSLTTCS*GES*QAP*PTSSRTGAPQTRRGR 644
           LTS S   ++ AS S +S   L ++S   SSL + S   S  A   T+S + A  +    
Sbjct: 109 LTSSSATSSSLASSSTTSS-SLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNST 167

Query: 645 AAHQPSSTPSSWRVTSPTAS 704
            +  P+S+ +S  ++S  AS
Sbjct: 168 TSATPTSSATSSSLSSTAAS 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,621
Number of Sequences: 5004
Number of extensions: 56830
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)